Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g02973 ATGAAACAAAAAAGTTCTATAGTTTCCAAGATGAAAAGCAAAGTCAGTGGCTTTTACTTGATGGACTTCAGTCCTGATGAATATGAAGCAGCTGATGGTCTTGTTTTATTGCAAACACTGTTTGAAAAGAAGAAGATTGCTAGAAAACTGAAAATTACTTTTGGAGGCAAAAAGCTTTGTGAAAAAACCTACAACAACAATGTTTGTTCGGTCGTTTCAAATAACAAGGTTAGTTCATCGGCACAAATCATTGTTCCTAATGTCGTTATGGGAAACGAAGAGCACCCATCAAATATACTAACGATTCCTGGCGTGGCAAACAATAATATTGTTGGGTGTTGCAAGCCTTTTGAGAAGAAACTATCAACGAGTGATTTGAAGGTTGATCTAAATAGATTGTTTTTGGACAAGGGCCATGTGAAAAAATATTTTTTACCCTTGTTGAAAGAAGGCGAAGATGTTGAAGAAGGAATAGACGTCGTTGTATATGACATGCAAGGCAAAATGTTCAACATGAAGTTCAAGTTTTGGAGCGGAAAATTTTATGTTCTTAATGGAGGGTGGAAGACTTTCTTCAAATCGCATTCTTTGCTAGCAAATCAAGATCATGTTACAGTGTGGATGTTTCGTCATTTTGAAACCGGCAATTTGTGTTTTGCTCTCAATGTGAAAAGAGTGTAG 681 0.3627 MKQKSSIVSKMKSKVSGFYLMDFSPDEYEAADGLVLLQTLFEKKKIARKLKITFGGKKLCEKTYNNNVCSVVSNNKVSSSAQIIVPNVVMGNEEHPSNILTIPGVANNNIVGCCKPFEKKLSTSDLKVDLNRLFLDKGHVKKYFLPLLKEGEDVEEGIDVVVYDMQGKMFNMKFKFWSGKFYVLNGGWKTFFKSHSLLANQDHVTVWMFRHFETGNLCFALNVKRV 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g02973 226 Gene3D - 117 226 IPR015300 -
Trre11g02973 226 CDD B3_DNA 117 219 IPR003340 GO:0003677
Trre11g02973 226 ProSiteProfiles B3 DNA-binding domain profile. 118 225 IPR003340 GO:0003677
Trre11g02973 226 SUPERFAMILY DNA-binding pseudobarrel domain 117 214 IPR015300 -
Trre11g02973 226 Pfam B3 DNA binding domain 117 200 IPR003340 GO:0003677
Trre11g02973 226 PANTHER B3 DOMAIN PLANT PROTEIN-RELATED 85 224 IPR005508 GO:0003677
Trre11g02973 226 SMART B3_2 117 225 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g02973 Trre-Chr11 39855708 39856388 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g02973 115 222 B3 DNA Binding Superfamily AT4G03170 45.872 3.20e-25 97.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre11g02973 B3 6.9e-08 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g02973 - - tpra:123915381 352.058