Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g02961 ATGACAGGGACAAATTCATGGCAGGTAGATGCCGCGACATTGCTAGTCGGAGTGGTTTTGAGGATAATCTATGGAAAAATGAGCATAAACCATAAGCAGAAATGGACTGCAAAAGAAGAAGCAACGCTGAAAGCTGGAATTATCAAACACGGGTCAGGAAAATGGCGCACTATACTTACTGATCCTGAGTTCAGTTCCATTTTGGTACGCGGTCCAATAACAAATCAAGGTTGGGGGATAAAGGCTATTGTCAATATGGAGTCAAAGGGTTCTGATAAGGCTACCACTGCTTCTTACATAGAGGACATAGGTGAATGA 318 0.4277 MTGTNSWQVDAATLLVGVVLRIIYGKMSINHKQKWTAKEEATLKAGIIKHGSGKWRTILTDPEFSSILVRGPITNQGWGIKAIVNMESKGSDKATTASYIEDIGE 105
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g02961 105 PANTHER SINGLE MYB HISTONE 4 31 69 IPR044597 GO:0003691
Trre11g02961 105 Gene3D - 26 74 - -
Trre11g02961 105 CDD SANT_TRF 33 66 - -
Trre11g02961 105 SUPERFAMILY Homeodomain-like 31 63 IPR009057 -
Trre11g02961 105 FunFam Telomere repeat-binding factor 1 30 73 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g02961 Trre-Chr11 39575542 39577212 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g02961 32 68 Single Myb Histone (SMH) Gene Family AT1G49950 72.973 1.67e-14 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g02961 K09422 - zju:107424928 74.3294