LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre11g02913	ATGAGTCAGCAGAAAATTAAGCGCAGAGTCGGTGTATATGAGATAAAGTGGGAAATTTCTACGATGAAGTTAATCAAGTATCCAAATGTTGTTCGACTATATGAGGTCATGGGAAGCAGGACAAAAATATATATTGTTTTGGAGTTTGTGACTGGCGGGGAGCTTTTCGACAAAATTGTAAACCATGGACGGATGAGTGAACATGAAGCACGTAGGTATTTCCAGCAGCTTATAAATGTTGTTGATTATTGTCATAGCCGGGGTGTTTATCACCGAGATCTAAAGCCAGAAAATTTGCTATTAGATAGTTTTGGTAACCTTAAAGTCTCCGATTTCGGGTTGAGTGCACTCTCCCAGCAAGTTAGACTGCAGAAAGCTAATAACTCAATTCCTGCACACTTTCTCAATCTAAGTGCTTTCAAAACAAATTTTGCTAACCAAGGGCTCTCAGTGAAAGACTTGGTGGCTCTTTCAGGAGCACATACAATTGGCCTAACTAGATGTGTGCAATTTCAATTACTGAATAATGAATATTAG	537	0.3892	MSQQKIKRRVGVYEIKWEISTMKLIKYPNVVRLYEVMGSRTKIYIVLEFVTGGELFDKIVNHGRMSEHEARRYFQQLINVVDYCHSRGVYHRDLKPENLLLDSFGNLKVSDFGLSALSQQVRLQKANNSIPAHFLNLSAFKTNFANQGLSVKDLVALSGAHTIGLTRCVQFQLLNNEY	178

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre11g02913	178	SMART	serkin_6	4	174	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre11g02913	178	Gene3D	Peroxidase, domain 2	132	177	-	-
	Trre11g02913	178	ProSiteProfiles	Plant heme peroxidase family profile.	12	171	IPR002016	GO:0004601\|GO:0006979\|GO:0020037
	Trre11g02913	178	ProSiteProfiles	Protein kinase domain profile.	1	178	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre11g02913	178	ProSitePatterns	Peroxidases proximal heme-ligand signature.	153	163	IPR019793	-
	Trre11g02913	178	SUPERFAMILY	Heme-dependent peroxidases	125	172	IPR010255	GO:0004601\|GO:0006979\|GO:0020037
	Trre11g02913	178	Pfam	Protein kinase domain	14	120	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre11g02913	178	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	89	101	IPR008271	GO:0004672\|GO:0006468
	Trre11g02913	178	Gene3D	Transferase(Phosphotransferase) domain 1	1	131	-	-
	Trre11g02913	178	Pfam	Peroxidase	124	172	IPR002016	GO:0004601\|GO:0006979\|GO:0020037
	Trre11g02913	178	PANTHER	CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED	7	119	-	-
	Trre11g02913	178	SUPERFAMILY	Protein kinase-like (PK-like)	8	120	IPR011009	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre11g02913	Trre-Chr11	38763653	38765014	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre11g02913	1	122	CBL-interacting serine-threonine protein kinases	AT2G26980	75.410	5.41e-63	198

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CAMK_CAMKL-CHK1	Trre11g02913		peroxidase	7.6e-11	CL0617

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre11g02913	-		-	gmx:100794566	205.682