Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trre11g02912 | ATGAGTCAGCAGAAAATTAAGCGCAGAGTCGGTGTATATGAGATAAAGTGGGAAATTTCTACGATGAAGTTAATCAAGTATCCAAATGTTGTTCGACTATATGAGGTCATGGGAAGCAGGACAAAAATATATATTGTTTTGGAGTTTGTGACTGGCGGGGAGCTTTTCGACAAAATTGTAAACCATGGACGGATGAGTGAACATGAAGCACGTAGGTATTTCCAGCAGCTTATAAATGTTGTTGATTATTGTCATAGCCGGGGTGTTTATCACCGAGATCTAAAGCCAGAAAATTTGCTATTAGATAGTTTTGGTAACCTTAAAGTCTCCGATTTCGGGTTGAGTGCACTCTCCCAGCAAGTTAGAAAAGCTAATAACTCAATTCCTGCACACTTTCTCAATCTAAGTGCTTTCAAAACAAATTTTGCTAACCAAGGGCTCTCAGTGAAAGACTTGGTGGCTCTTTCAGGAGCACATACAATTGGCCTAACTAGATGTGTGCAATTTCAATTACTGAATAATGAATATTAG | 531 | 0.3861 | MSQQKIKRRVGVYEIKWEISTMKLIKYPNVVRLYEVMGSRTKIYIVLEFVTGGELFDKIVNHGRMSEHEARRYFQQLINVVDYCHSRGVYHRDLKPENLLLDSFGNLKVSDFGLSALSQQVRKANNSIPAHFLNLSAFKTNFANQGLSVKDLVALSGAHTIGLTRCVQFQLLNNEY | 176 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trre11g02912 | 176 | ProSiteProfiles | Plant heme peroxidase family profile. | 12 | 169 | IPR002016 | GO:0004601|GO:0006979|GO:0020037 | |
| Trre11g02912 | 176 | SUPERFAMILY | Heme-dependent peroxidases | 123 | 170 | IPR010255 | GO:0004601|GO:0006979|GO:0020037 | |
| Trre11g02912 | 176 | Pfam | Peroxidase | 120 | 170 | IPR002016 | GO:0004601|GO:0006979|GO:0020037 | |
| Trre11g02912 | 176 | PANTHER | CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED | 7 | 119 | - | - | |
| Trre11g02912 | 176 | SMART | serkin_6 | 4 | 172 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Trre11g02912 | 176 | Gene3D | Peroxidase, domain 2 | 131 | 175 | - | - | |
| Trre11g02912 | 176 | Gene3D | Transferase(Phosphotransferase) domain 1 | 1 | 130 | - | - | |
| Trre11g02912 | 176 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 89 | 101 | IPR008271 | GO:0004672|GO:0006468 | |
| Trre11g02912 | 176 | ProSiteProfiles | Protein kinase domain profile. | 1 | 176 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Trre11g02912 | 176 | SUPERFAMILY | Protein kinase-like (PK-like) | 8 | 120 | IPR011009 | - | |
| Trre11g02912 | 176 | ProSitePatterns | Peroxidases proximal heme-ligand signature. | 151 | 161 | IPR019793 | - | |
| Trre11g02912 | 176 | Pfam | Protein kinase domain | 14 | 123 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Trre11g02912 | Trre-Chr11 | 38763653 | 38765014 | Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Trre11g02912 | 1 | 122 | CBL-interacting serine-threonine protein kinases | AT2G26980 | 75.410 | 5.41e-63 | 198 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| PK | CAMK_CAMKL-CHK1 | Trre11g02912 | peroxidase | 5.6e-11 | CL0617 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Trre11g02912 | - | - | gmx:100794566 | 205.682 |