Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g02882 ATGGAGGTTATTGCTAAACCATTTGACAATAATAATGGTTTCCAGAGACTTAGTCCATTATCTGAAAAATCAGCATATGCATCTGAATACACCTCAATTTCTGATCTAACTCGTGCACGGCGGCGTGGCTGCCACGGATTGTTTATGTCGTTAATGGATTCGACATCGACTCCATCACTCATTCATGGTGGTAGCTCAGAAACAAATACTGATAAGTCTCAATGCTATTATCCTACGAATAAGGAATCATGGGAGTCTTTAGGATTTGCAACTGTTGAAGAGATTGAAAAGTTTTATGGTAACTATGCATATAACATTGGATTTTCCATTAGGACTCAGTTGAAGGGAAAGGTCAATTCAATGGGCCAAAAAACAGACAGGGTACATTATGTCCGTTTTGTTTGTAACAAAGAAGGTTTCAGAAGGGGAAGCTTGCTTGACCATAAGAATAGGTCAAGATCAGATAGTCAACTTATTATTGAGTTTGAGAAAGTGAAAGAGAGACCGGAGGAAAGGGTTGGCTGTAAAGCTGGGATATCCTTGAAGTGGGATGAAGCTTTGAGTGTTTACAAGATATACAAGTGGGATGTGGATCATTGTCATGCGTTACATAAATCAGAACATTCGCGCTACTTGAGAGCATTTAGAGAAGTCAATGAAGTGCAAGGACAGCTAGCTGTAATCAATTCCAAAGCTGGAATGTCGATTAGAAATTCTTATGAAGTCATGGGTCAGGGAGTTGGAGGCACAGACAATCTCCCTTTTCGATTTTCGGATTTAAAGAATTATTTGATGACAGTTCGTCAGAAAGAGATGGTTGTTGGTGAAGCAACTGTGATCCAGGAATTCTTTAGGAACGAAGCTCATTCGAAACCTTCGTTTTATTATGATATTCAAGTTGATGCTGAAGAAGACATAGCTAGTATTTTCTGGGCAGATGGAATTATGCAGCATGATTATTCGCTATTTGGTGATGTTATTAGTTTTGACACGACTTACCGAACAAACAATCAATATCGTCCATTAGCTGCCTTCCTTGGTTTTGACAATCATCGAAAGAGTGTCTTATTTGGTGCTGCATTACTGTATGATGAGACGGCAGCCACATTTGATTGGTTGTTTACAACATTTTTAAAATGTATGTCCAATAAGCAACCACAGACAATATACACTGACCAGGCTCCTGCGTTGTTGAAGTCTGTTCCAAATATATTCAAAGGTGTTTTTCATGGGATTTGTTCATGGCATATGGCAGAGAATGCAAAGAAAAACCTTGGCTCTCGTGCAAACAGTGCTTTTTTTGATGAATTTAATAACTTGGTTTCAAATGTAGAAGATGAATTAGAATTTGACTACAATTGGGAGCAGATGATGAAAAATTGCTTTGATGGAAGACCTACTTCAAACTTTAGGTGGCTTGTCCAAACTCACAAAATTCGTATGCATTGGTCTTCTGCTTGGGTCAAGTCAACTTTTACAGCTGGTCTTAAAACAACTCAGTTGAGCGAGTCTTTCAATGCTTTTCTTCGTCGTTTTTTGCAGCCAGACCATTCACTTGTTCGTTTCTTTAGTCATTTCAACATCATGGTTCAGAGAATGAGGGATAACCACACTGAGTTGGACTTCAAGGCTGCAAACACTAAAACCAAAAATAATTATCCCAACAGTCAGCTGATGCGGTCCGTTGTTAACAAGTACACACCAGCTTGCTTTGCATTTATTCACAGGCAATATGACCTTTCATTCAAATACTATTATGAAGAGGACACAACCAAAGGGTCTGACTTGATTAGGGTTTTCAATGTTTTCACAATTGAAAAGGTTCATGATCCTGATGAAGTAGACGATGATAAGTATGATGATGCTGATAATGATGGGGGCTCAAATGCTGATGTTATGGATGAAGAACTTCAAGATCATGATCGACTTGATGAAAGGGTTGTCACTGTTGATGTTAGGAGCAAAAGTTTTACCTGCACATGTCGGATGTTTGAGAACAGGGGCTTTTTATGTCGACATGTTTTCAAAATTTTGGAGTTCCTAGGTGGTTCTGTTCAATATCATTCCTTGAAGACAATTCCTGCACAATATATTTTAAAGCGTTGGACTAGAGATGTGCGTCCGTCTGCAGATAAGCTGAAATCTATCATCAGTGCTACGACTGAAGACACAACTCAAGCACAAAGATATCAACAAATTTGTGCTGTTACAGTTCAGCTTTGTACACGTGTTTGTGCAGATCCGGAGGCTTCTCAAATCTTTCTTGATGGTATTATTGAAGCTGGGAAAAAGGCAGAGGAGTTGCTTCTTTCTAAAGGTATTCGTACTAACCCAGCTTCAGTGACGTCATCTAAGTCCTCAATAGTTGTTGCTGCTGGTGAAGCATCTTCTGGTGTGAAGTCTACTGCACCAAAGTTCAAAGAAAGAATAAATCCAAATAGGTCAAAGAAGCGAATGAAATGTGATTATGAAAAATCTAGGGAAAGGCAGAAACTCCGCCTAGAACGGAAGAAAAAACAGAAAGATGATCATGAGGCTTTAAAAACAAAAGCTGGAGAAGGGCTATCAACAAATGATTTCCAAAGCCAGCAAAGTTGTTCTGGTGTAAACCATTAG 2616 0.3895 MEVIAKPFDNNNGFQRLSPLSEKSAYASEYTSISDLTRARRRGCHGLFMSLMDSTSTPSLIHGGSSETNTDKSQCYYPTNKESWESLGFATVEEIEKFYGNYAYNIGFSIRTQLKGKVNSMGQKTDRVHYVRFVCNKEGFRRGSLLDHKNRSRSDSQLIIEFEKVKERPEERVGCKAGISLKWDEALSVYKIYKWDVDHCHALHKSEHSRYLRAFREVNEVQGQLAVINSKAGMSIRNSYEVMGQGVGGTDNLPFRFSDLKNYLMTVRQKEMVVGEATVIQEFFRNEAHSKPSFYYDIQVDAEEDIASIFWADGIMQHDYSLFGDVISFDTTYRTNNQYRPLAAFLGFDNHRKSVLFGAALLYDETAATFDWLFTTFLKCMSNKQPQTIYTDQAPALLKSVPNIFKGVFHGICSWHMAENAKKNLGSRANSAFFDEFNNLVSNVEDELEFDYNWEQMMKNCFDGRPTSNFRWLVQTHKIRMHWSSAWVKSTFTAGLKTTQLSESFNAFLRRFLQPDHSLVRFFSHFNIMVQRMRDNHTELDFKAANTKTKNNYPNSQLMRSVVNKYTPACFAFIHRQYDLSFKYYYEEDTTKGSDLIRVFNVFTIEKVHDPDEVDDDKYDDADNDGGSNADVMDEELQDHDRLDERVVTVDVRSKSFTCTCRMFENRGFLCRHVFKILEFLGGSVQYHSLKTIPAQYILKRWTRDVRPSADKLKSIISATTEDTTQAQRYQQICAVTVQLCTRVCADPEASQIFLDGIIEAGKKAEELLLSKGIRTNPASVTSSKSSIVVAAGEASSGVKSTAPKFKERINPNRSKKRMKCDYEKSRERQKLRLERKKKQKDDHEALKTKAGEGLSTNDFQSQQSCSGVNH 871
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g02882 871 Pfam MULE transposase domain 326 420 IPR018289 -
Trre11g02882 871 Coils Coil 827 847 - -
Trre11g02882 871 MobiDBLite consensus disorder prediction 800 871 - -
Trre11g02882 871 Pfam SWIM zinc finger 658 674 IPR007527 GO:0008270
Trre11g02882 871 MobiDBLite consensus disorder prediction 615 632 - -
Trre11g02882 871 Pfam FAR1 DNA-binding domain 97 204 IPR004330 -
Trre11g02882 871 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 85 764 IPR031052 GO:0006355
Trre11g02882 871 SMART 26again6 657 684 IPR006564 GO:0008270
Trre11g02882 871 MobiDBLite consensus disorder prediction 854 871 - -
Trre11g02882 871 ProSiteProfiles Zinc finger SWIM-type profile. 648 682 IPR007527 GO:0008270
Trre11g02882 871 MobiDBLite consensus disorder prediction 613 632 - -
Trre11g02882 871 MobiDBLite consensus disorder prediction 807 850 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g02882 Trre-Chr11 38226590 38230859 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Trre11g02882 FAR1 2.3e-12 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g02882 - - mtr:120577859 1246.11