Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g02875 ATGAGACAAACACTCTCAAAACCATTCCAAACCTCAAAATCGCATTTCAAGTGCAAATCCACTCGTTTCTTCGCCATTGTGATCAGAATCAAAAGTCACAAACAACTTCAATCATCAATAACGACGAGACTTGATTTTCTGTTCGTTATTGTTTTTGATTTCTGTTGGATTGATGTCACATCAATGATAATTCTGGGACCGCGTCTCTACAACGGGAAAGAACAAGAGCCTTGGAAGAGGCGGAGGGTTCTACTCGACGGAGAACATATGGCCAGATATGTATACGAAGACTACTTTATTTCAAAAGAAGGATTAAGCAAACCAACCAACATGTTTGGCTCTCGACAACGTCGTAACATTGTGAGTCATATGTTTGAGAATGAGTTGCCAAGTGAACAACCACAACCCGACCAATGTCCCAAAAAAAGGAGCAATCTTTGCATCACACAAGAGCAAATAGAAGAATTGGATGTTTTCTTCAAGCTGAAAGATCACCCAAATGAGAGTGAAAGAAAAGAGTTGGGTCATCGTCTTGGCTTAGATCCTTCACAAGTTAAGTTCTGGTTTTGGAACAAGCGAACCAAATTGAAGATCCTAAGTCAAAGAGAAGAGAATAAAGCTTTGAAAGAGAAAAATGAAAAACTTCGAGCTGAGAATGCTATACTTCGAGCTCAGATGAATAGGTTCAAGGAGACCAACATGTGTGGACCCCAACTACCCTGA 723 0.4011 MRQTLSKPFQTSKSHFKCKSTRFFAIVIRIKSHKQLQSSITTRLDFLFVIVFDFCWIDVTSMIILGPRLYNGKEQEPWKRRRVLLDGEHMARYVYEDYFISKEGLSKPTNMFGSRQRRNIVSHMFENELPSEQPQPDQCPKKRSNLCITQEQIEELDVFFKLKDHPNESERKELGHRLGLDPSQVKFWFWNKRTKLKILSQREENKALKEKNEKLRAENAILRAQMNRFKETNMCGPQLP 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g02875 240 Pfam Homeodomain 143 197 IPR001356 GO:0003677
Trre11g02875 240 CDD homeodomain 140 197 IPR001356 GO:0003677
Trre11g02875 240 Gene3D - 126 217 - -
Trre11g02875 240 SMART HOX_1 141 203 IPR001356 GO:0003677
Trre11g02875 240 Coils Coil 191 232 - -
Trre11g02875 240 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 141 235 IPR042160 -
Trre11g02875 240 SUPERFAMILY Homeodomain-like 122 197 IPR009057 -
Trre11g02875 240 ProSiteProfiles 'Homeobox' domain profile. 139 199 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g02875 Trre-Chr11 38139813 38142936 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g02875 126 237 Homeobox Transcription Factor Family AT4G21750 46.903 2.12e-24 99.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Trre11g02875 Homeodomain 1.5e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g02875 K09338 - apan:127249802 99.7525