Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g02851 ATGGCATCATCAGCCCCTCAAGTCATAACCTGCAAAGCTGCAGTGGTATGGGGAGCTGGAGAGGGATTGGTAATGGAGGAAGTGGAAGTCAGTCCTCCCCAACCATTCGAGATTAGAATTAAGGTTGTCGCCACCTCTATCTGCTCTAGGGATCTTAATGCTCGGAAATATAAAGCCATTTTTCCTCGCATATTAGGCCATGAAGCATCTGGAATTATTGAGAGTGTAGGGCAAGGAGTGACTGAATTCAAAGAAGGAGACCATCTGTTAACAGTTTTCATCGGAGAGTGCATGTCATGCAGGACGTGCAAATCAGGAAAGAGTAGTATTTGTCAAGTTTTGGGATTGGAAAAAAAGGGTTTAATGCATACCGATCAAAAGACGCGATTCACGGTAAAAGGGAAGCCTGTATATCATTATTGTGCAGTTTCAAGTTTTAGTGAATATACAGTAGTCCATTCTGGATGTGCCGTAAAAATCAGTCCTCATGTTCCTCTTGAGAAACTATGCCTTCTCAGTTGCGGTGTTGCTGCAGGTTTGGGCGCAGCATGGAATATTGCTGACGTGTCAAAGGGATCAACAGTGGTTATATTTGGTCTTGGAACGGTTGGCCTTTCTGTTGCTCAAGGCGCCAAACTAAGGGGTGCGTCTAGAATAATTGGTGTTGACAAAAATCCACGAAAGTGTGTAAATGCTAAAGCTTTTGGGATTACTGAAATCGTTGATCCGAATTTGTACAAAGAACGACCTATCGCGCAGGTTATAAGGAACATCACTAATGGTGGAGCAGATTTCTGTTTTGATTGTGTAGGTGACACTGATATGATAACCACTGCATTGGAGTCATGTTGTGATGGATGGGGTATGACAGTAGCACTTGGTGTGCCAAAGGCTAAGCCTAAGATCTCAGCTCATTATTCTCTATTCCTAAGAGGAAGAACATTAAAAGGATCTATATTTGGAGGATGGAAACCTAAATCAGACATTCCTTCATTAGTAGAGAAGTATATGAATAAGGAAATCCAGATTGATGATTACATAACACACAATTTGCCATTTGATGACATTAACAAAGCTTTCAATCTCATGACAGAAGGAAAGTGTCTTCGTTGTGTTATCCACATGCCAAGATAA 1134 0.4162 MASSAPQVITCKAAVVWGAGEGLVMEEVEVSPPQPFEIRIKVVATSICSRDLNARKYKAIFPRILGHEASGIIESVGQGVTEFKEGDHLLTVFIGECMSCRTCKSGKSSICQVLGLEKKGLMHTDQKTRFTVKGKPVYHYCAVSSFSEYTVVHSGCAVKISPHVPLEKLCLLSCGVAAGLGAAWNIADVSKGSTVVIFGLGTVGLSVAQGAKLRGASRIIGVDKNPRKCVNAKAFGITEIVDPNLYKERPIAQVIRNITNGGADFCFDCVGDTDMITTALESCCDGWGMTVALGVPKAKPKISAHYSLFLRGRTLKGSIFGGWKPKSDIPSLVEKYMNKEIQIDDYITHNLPFDDINKAFNLMTEGKCLRCVIHMPR 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g02851 377 FunFam Alcohol dehydrogenase 6 14 194 - -
Trre11g02851 377 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 66 80 IPR002328 GO:0008270|GO:0016491
Trre11g02851 377 Pfam Zinc-binding dehydrogenase 203 328 IPR013149 -
Trre11g02851 377 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 164 339 IPR036291 -
Trre11g02851 377 Pfam Alcohol dehydrogenase GroES-like domain 37 159 IPR013154 -
Trre11g02851 377 FunFam S-(hydroxymethyl)glutathione dehydrogenase 179 318 - -
Trre11g02851 377 FunFam Uncharacterized protein 319 370 - -
Trre11g02851 377 SUPERFAMILY GroES-like 326 374 IPR011032 -
Trre11g02851 377 SUPERFAMILY GroES-like 5 184 IPR011032 -
Trre11g02851 377 Gene3D - 179 318 - -
Trre11g02851 377 Gene3D - 14 370 - -
Trre11g02851 377 PANTHER ALCOHOL DEHYDROGENASE 7 373 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g02851 Trre-Chr11 37826614 37830849 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g02851 37 174 Monolignol Biosynthesis Gene Families AT4G37990 25.352 3.67e-09 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g02851 K00001 - gmx:100819938 655.21