LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre11g02849	ATGCCCTTTTTGGCTTGTGAAAAACGGGGTGTCACAATAGACAATGTTAAGGCCAAGATTCAAGATAAGGAAGGGATCCCACCGGACCAGCAGCGTCTGATTTTTGCTGGAAAGCAGCTGGAGGATGGTCGTACCCTTGCTGATTACAACATCCAAAAGGAATCCACCCTCCATTTGGTCCTCCGTCTCCGTGGTGGTATGCAAATCTTTGTGAAGACTCTCACTGGTAAGACGATCACTCTTGAGGTGGAGAGCTCTGATACCATTGACAATGTCAAGGCCAAGATACAAGACAAAGAGGGAATCCCACCAGACCAGCAAAGGTTGATTTTTGCTGGAAAGCAGCTCGAAGATGGCAGGACATTAGCTGATTACAACATCCAGAAGGAATCCACTCTTCATCTTGTCCTTCGTTTGAGGGGAGGCAAAAATACAGGACAAGGAAGGAATCCCACCAGATCAGCAGAGGTTGATCTTTGCTGGGAAGCAATTGGAGGATGGAAGGACCCTTGCTGA	516	0.4767	MPFLACEKRGVTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGKNTGQGRNPTRSAEVDLCWEAIGGWKDPC	171

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre11g02849	171	ProSiteProfiles	Ubiquitin domain profile.	12	66	IPR000626	GO:0005515
	Trre11g02849	171	SUPERFAMILY	Ubiquitin-like	11	66	IPR029071	-
	Trre11g02849	171	SMART	ubq_7	2	62	IPR000626	GO:0005515
	Trre11g02849	171	SMART	ubq_7	67	138	IPR000626	GO:0005515
	Trre11g02849	171	CDD	Ubl_ubiquitin	67	142	-	-
	Trre11g02849	171	Pfam	Ubiquitin family	11	64	IPR000626	GO:0005515
	Trre11g02849	171	Pfam	Ubiquitin family	69	140	IPR000626	GO:0005515
	Trre11g02849	171	SUPERFAMILY	Ubiquitin-like	66	143	IPR029071	-
	Trre11g02849	171	PRINTS	Ubiquitin signature	77	97	IPR019956	-
	Trre11g02849	171	PRINTS	Ubiquitin signature	119	140	IPR019956	-
	Trre11g02849	171	PRINTS	Ubiquitin signature	98	118	IPR019956	-
	Trre11g02849	171	FunFam	Polyubiquitin 3	68	142	-	-
	Trre11g02849	171	Gene3D	-	68	158	-	-
	Trre11g02849	171	Gene3D	-	7	67	-	-
	Trre11g02849	171	ProSitePatterns	Ubiquitin domain signature.	93	118	IPR019954	-
	Trre11g02849	171	ProSiteProfiles	Ubiquitin domain profile.	67	142	IPR000626	GO:0005515
	Trre11g02849	171	ProSitePatterns	Ubiquitin domain signature.	17	42	IPR019954	-
	Trre11g02849	171	PANTHER	UBIQUITIN	67	144	-	-
	Trre11g02849	171	FunFam	Putative Polyubiquitin-C	3	67	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre11g02849	Trre-Chr11	37764389	37764987	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre11g02849	12	67	Cytoplasmic Ribosomal Protein Gene Family	AT3G52590	98.214	5.33e-34	115

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre11g02849	-		K08770	psom:113344796	260.381