Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g02848 ATGGACGTTGTTATTTCAGTTGTTGCTAAAATTGCTGAATTTACTATTACACCTATTGGACGTCAATTTGGTTACATACTATACTACAAGGGCAACCTTGAAAGGATGAAAAGTTTTGTCCTAGAGATGGAGGGAATGAAAGACAGTGTGCAACACACTGTTGATGAGGCTAGAAGGAACGGAGAAGAGATTGAAATAATTGTCCAGAACTGGCTGAACAAAGTGGACAACACTATTGCTGAGGCAAAGAAACTCATTGACACTGAAGGCCATGCCAAAGCCCATTGTTCTATGGGACACTTTACCAATCTGTTCACAAGGCATCAACTCAGCAGGAAGACCAGAAAGATGTCGCAAGAGATTTCTCAAGTCCTAGCAGAAGGAAAATTTGACAAAATTTCATACCGTGTTCCTGCTCAAGTGACAGTTACGCCGTTTGGCAGAGGTTATGAGGCCTTGGACTCTAGAACATCAATGTTGAACGATATTATGATGGAATTGAAGAATCCTAACAACTCCATTATTGGGGTGTATGGGATGGGTGGTGTGGGTAAGACAAAACTTGTGGAACAGTTAGCTTGGCAAGCAAAGAATGATAGGTTATTCAGTGTTGTAGCTCTTGCTACTATAACTGATTCTCCAGATTTGGAAAAAATTCAAGAAAAAATTGCTGATGATTTGGGTATGAAATTTAATATGCAGACAAAAGAAGGAAGAGCAATGCAATTACGTCAAAGGATAAGCAATGAGAAGAGTATTCTCGTTATTCTTGATGACATTTGGGGTAAACTTGATTTGACAGAAGTGGGGATTCCTTTTGGTGACGATCACAAAGGATGCAAGTTGGTGGTGACATCCAGAGATCTCAATGTGTTGAACCGTGAAATGGGCACTGAAAAAGAATTTAGACTTGAAGTGTTACTTGAGGAGGATAGTTGGAAATTATTTGCAAAAATGGCAGGTGATGTTGTTCATGATTTCAATATAAAAACAATTGCTATAGAAGTGGCCAGACGTTGTGCTGGTTTACCCCTTTTGATTGTTATAGTGGCAAAGGCTTTGAGGAAAAAGCATGTCGTTGATTGGCAGGATGCCTTAAATGAATTAAAGAGATCTGATCAAGAAGGGCTGCCTAATAAAGTTTACACCAGTCTGGAATTGAGTTATAATTTTTTAGAGAGCGAGGAACTGAAGTTGCTATTCTTATTCATTGGTTCCTTTGGGTTAGATCACCTCTACACCGGACCCCTGTTTACACGTTCTTGGGGGTCAGGCTTATATAGACACTCTCGCACATTGACAAATTATAACACTCCAACTAAAATATCTAGAATATTTAGTCAAGACATAAATAAATGGATCTGA 1365 0.3905 MDVVISVVAKIAEFTITPIGRQFGYILYYKGNLERMKSFVLEMEGMKDSVQHTVDEARRNGEEIEIIVQNWLNKVDNTIAEAKKLIDTEGHAKAHCSMGHFTNLFTRHQLSRKTRKMSQEISQVLAEGKFDKISYRVPAQVTVTPFGRGYEALDSRTSMLNDIMMELKNPNNSIIGVYGMGGVGKTKLVEQLAWQAKNDRLFSVVALATITDSPDLEKIQEKIADDLGMKFNMQTKEGRAMQLRQRISNEKSILVILDDIWGKLDLTEVGIPFGDDHKGCKLVVTSRDLNVLNREMGTEKEFRLEVLLEEDSWKLFAKMAGDVVHDFNIKTIAIEVARRCAGLPLLIVIVAKALRKKHVVDWQDALNELKRSDQEGLPNKVYTSLELSYNFLESEELKLLFLFIGSFGLDHLYTGPLFTRSWGSGLYRHSRTLTNYNTPTKISRIFSQDINKWI 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g02848 454 FunFam Probable disease resistance protein At1g61300 150 301 - -
Trre11g02848 454 Gene3D - 307 393 IPR042197 -
Trre11g02848 454 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 143 404 IPR027417 -
Trre11g02848 454 Pfam NB-ARC domain 159 389 IPR002182 GO:0043531
Trre11g02848 454 PANTHER NB-ARC DOMAIN-CONTAINING PROTEIN-RELATED 19 417 - -
Trre11g02848 454 PRINTS Disease resistance protein signature 247 261 - -
Trre11g02848 454 PRINTS Disease resistance protein signature 174 189 - -
Trre11g02848 454 PRINTS Disease resistance protein signature 340 354 - -
Trre11g02848 454 Gene3D - 146 306 IPR027417 -
Trre11g02848 454 SMART AAA_5 171 310 IPR003593 GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g02848 Trre-Chr11 37724560 37725924 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g02848 174 429 WRKY Transcription Factor Family AT5G45050 27.138 7.80e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g02848 - - mtr:120578394 600.512