Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g02830 ATGTCATCAATAAGCAATTTCAAACAGAACAAACAATATGATAAATTGTCTCAAGTCAGCAATGATATTCAAATTGATTTGGTTCGTAGCGGGCGCCGACAAAAGGTATCCATCTTTGACATTGTTGTTGGTGATGTTGTTTGTTTGAAGATCGGTGATCAAGTACCGGCTGATGGATTGTTTGTAGATGGACATTCATTGAGAGTCGATGAACTGAGCATGACCGGAACACAGACTGACAACGATGTTAAAGAGTTTAACGGGCAGAAGACTAGTTTTGATGATGTGATGAATGCAATTATTGGAATTATTGTTGATGCTGTTACTATTGTCGTTGTTGCTATCCCGGAGGGTTTGCCATTAGCCGTGACATTGGCACTTGTTTATTCAATGAAGAAAATGATGGCTGATCAAGCTATGGTTAGAAAACTTTCTGCTTGTGAGACTATGGAATCTGCTACTATTATCTGCACTGACAAAACAGGTACACTGCCTTTGAATCAGATGAAGGTGACAAAGTTTTGGCTTGGTCTAGAGCCTTTGGAAAATGATGCATATTCAAATGTTGATCTATTTGTTCTTCAATTGATCAAAGAAGGAGTTGCTCATAATACAACCGGTGGTGTTCACGAATCTAAATTAGATTCTGATTCAAAATTCGAGTTTTCCGGTAGTCCAACCGAAAAGGCGATATTATCTTGGGCTGTTTTGGAATTGAATATGGATATGGAAAATTTGATAAAAAGTTGTTCTATTATTCAAGTTGAGACATTTAACTCAAAGAAGAAAAGAAGCGGTGTTTTATTGAGAAGAAATGTTGACAACAAAGTTGGTGCGCATTGGAAAGGAGCAGCCGAGATGGTATTAAGAATGTATTCAAGATACTATGATGGGTATGGGAATGTGAAAGATATTGACAATGAAACCATGTCGAAATTTGAAAGCATTATTCAAGGTATGGCAGCTAGTAGTCTTCGTTGTATTGCTTTAGCTTACGCAGAAGTCTCTGAAGAAGATCTACGAGGTGAAGGAGACAACAACAAGATTGTGGTAAAAGATAATGGTTTAACATTGATAGGACTTATTGGTATTAAGGATCCGTGTCGTTCAGGAGTGAAAACGGCAGTGGAGGCTTGCCAACATGCCGGCGTGAATGTCAAAATGATTACAGGTGACAATGTTTTCACTGCAAAAGCCATAGCATTCGAATGTGGAATTCTTCGACCTGATCAAGACACAGACGAAACTGTGGTAGAAGGTGAACAATTTCATAATTTTTCGCCTGAAGAGAGGTTAGAGAAAGTTGGCAAAATATCTGTAATGGCAAGATCTTCTCCTTTTGACAAACTTCTAATGGTGCAATGCTTAAAGCAAAAAGGACATGTAGTTGCCGTTACCGGAGATGGAACAAACGATGCACCCGCATTGAAAGAAGCCGATATTGGTCTTTCGATGGGAATTCAAGGTACCGAAGTTGCGAAAGAGAGTTCAGATATTGTTATATTAGATGACAATTTTGCATCTATAGTAACGGTTTTAAATTGGGGAAGATGTGTTTACAACAACATTCAAAAATTCATTCAATTTCAACTAACAGTGAATGTAGCTGCACTTGTTATCAATTTCGTCGCGGCGGTTTCAGCAGGTGAAGTTCCATTAACAGCAGTTCAATTATTATGGGTGAATTTGATTATGGATACATTAGGTGCATTGGCTCTTGCAACTGAAAAACCAACTAAGGAATTAATGGATCAAAAACCTGTTGGTAGAACAAAACCTCTTATTACTAACATCATGTGGAGGAATCTTTTGTCACAAGCTTTGTACCAAATAGTAATTTTGTTGACACTTCAATTCAAAGGTGAAACTATTTTTGGTGTGACATCAAAGGTAAACGACACATTGATTTTCAATACATTTGTTCTTTGTCAAGTGTTTAACGAGTTTAATGCTAGAAAGTTGGAGAAGAAGAATGTGTTTGAAGGGATACTTAAGAGTAAGTTGTTTTTGGGAATTGTTGGTGTGACATTGGTGCTTCAAGTGGTTATGGTTGAGTTTTTGAAGAAATTTGCTGATACAGAGAGGTTGAATTGGAGAGAATGGATTATTTGTATTGGTTTTGGTGCTGTTTCCTGGCCAATTGGTTTTGTTGTAAAGTTGATACCTCTCTCAGATTAA 2178 0.3737 MSSISNFKQNKQYDKLSQVSNDIQIDLVRSGRRQKVSIFDIVVGDVVCLKIGDQVPADGLFVDGHSLRVDELSMTGTQTDNDVKEFNGQKTSFDDVMNAIIGIIVDAVTIVVVAIPEGLPLAVTLALVYSMKKMMADQAMVRKLSACETMESATIICTDKTGTLPLNQMKVTKFWLGLEPLENDAYSNVDLFVLQLIKEGVAHNTTGGVHESKLDSDSKFEFSGSPTEKAILSWAVLELNMDMENLIKSCSIIQVETFNSKKKRSGVLLRRNVDNKVGAHWKGAAEMVLRMYSRYYDGYGNVKDIDNETMSKFESIIQGMAASSLRCIALAYAEVSEEDLRGEGDNNKIVVKDNGLTLIGLIGIKDPCRSGVKTAVEACQHAGVNVKMITGDNVFTAKAIAFECGILRPDQDTDETVVEGEQFHNFSPEERLEKVGKISVMARSSPFDKLLMVQCLKQKGHVVAVTGDGTNDAPALKEADIGLSMGIQGTEVAKESSDIVILDDNFASIVTVLNWGRCVYNNIQKFIQFQLTVNVAALVINFVAAVSAGEVPLTAVQLLWVNLIMDTLGALALATEKPTKELMDQKPVGRTKPLITNIMWRNLLSQALYQIVILLTLQFKGETIFGVTSKVNDTLIFNTFVLCQVFNEFNARKLEKKNVFEGILKSKLFLGIVGVTLVLQVVMVEFLKKFADTERLNWREWIICIGFGAVSWPIGFVVKLIPLSD 725
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g02830 725 PANTHER CATION TRANSPORTING ATPASE 2 78 - -
Trre11g02830 725 Gene3D - 93 719 - -
Trre11g02830 725 Gene3D - 167 367 IPR023299 GO:0000166
Trre11g02830 725 FunFam Calcium-transporting ATPase 483 725 - -
Trre11g02830 725 Pfam Cation transporting ATPase, C-terminus 551 721 IPR006068 -
Trre11g02830 725 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 167 367 IPR023299 GO:0000166
Trre11g02830 725 Pfam E1-E2 ATPase 24 78 - -
Trre11g02830 725 SFLD p-type atpase 139 519 IPR044492 -
Trre11g02830 725 SUPERFAMILY Calcium ATPase, transduction domain A 25 78 IPR008250 -
Trre11g02830 725 SUPERFAMILY HAD-like 155 571 IPR036412 -
Trre11g02830 725 PRINTS H+-transporting ATPase (proton pump) signature 313 331 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trre11g02830 725 PRINTS H+-transporting ATPase (proton pump) signature 498 523 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trre11g02830 725 PRINTS H+-transporting ATPase (proton pump) signature 466 482 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trre11g02830 725 Gene3D - 10 76 - -
Trre11g02830 725 Gene3D - 154 511 IPR023214 -
Trre11g02830 725 Pfam haloacid dehalogenase-like hydrolase 155 480 - -
Trre11g02830 725 NCBIfam HAD-IC family P-type ATPase 100 180 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trre11g02830 725 NCBIfam HAD-IC family P-type ATPase 437 547 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trre11g02830 725 SFLD Haloacid Dehalogenase 139 519 - -
Trre11g02830 725 SUPERFAMILY Calcium ATPase, transmembrane domain M 95 722 IPR023298 -
Trre11g02830 725 FunFam Calcium-transporting ATPase 167 367 - -
Trre11g02830 725 FunFam Calcium-transporting ATPase 361 511 - -
Trre11g02830 725 NCBIfam calcium-translocating P-type ATPase, PMCA-type 96 723 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Trre11g02830 725 PRINTS P-type cation-transporting ATPase superfamily signature 466 485 - -
Trre11g02830 725 PRINTS P-type cation-transporting ATPase superfamily signature 382 392 - -
Trre11g02830 725 PRINTS P-type cation-transporting ATPase superfamily signature 490 502 - -
Trre11g02830 725 PRINTS P-type cation-transporting ATPase superfamily signature 157 171 - -
Trre11g02830 725 PRINTS P-type cation-transporting ATPase superfamily signature 360 371 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g02830 Trre-Chr11 37436844 37439691 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g02830 1 76 Primary Pumps ATPases AT3G63380 65.789 3.01e-21 97.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g02830 K01537 - gmx:100793918 1030.01