Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g02823 ATGTGTTCAAGATACGATGATGGTTATGGAAATGTGAAAAATCTTGATAATGAAACCATGTCGAAATTTGAAAGCATTATTCAAGGTATGGCCGTTAGTAGTCTTCGTTGCATTGCTTTAGCGTACGCAGAAGTTTCTAACGAAGATCTAGGAGGTGAAGGAGACAACAACAAGATTGGTATTAAGGATCCGTGTCGTCCTGGGGTGAAAACGGCAGTGGAGGCTTGCCAACATGCCGACGTGAATGTCAAAATGATTACAGGTTACAATGTTTTTACTGCAAAAGCCATAGCATTCGAATGTGGAATTCTTCGACCTAATCAAGACACAGACGAAACTGTGGTCGAAGGTGAACAATTTCGTAATTTTTCGCCTGAAGAGAGGTTAGCGAAAGTTGACAAAATCTCTGTAATGGCAAGATCTTCTCCTTTTGACAAATTTCTAATGGTGCAATGCTTAAAGCAAAAAGGACATGTAGTTGCCGTTACCAGAGATGGAACAAACGATGCACCTGCATTGAAAGAAGCCGATATCGGTCTTTCAATGGGAATTCAAGGTACCGAAGTTGCGAAAGAGAGTTCGGATATTATCTTAGATGACAATTTTGCATCTATAGTAACAGTTTTAAATTGGGGAAGATTGTAA 645 0.3969 MCSRYDDGYGNVKNLDNETMSKFESIIQGMAVSSLRCIALAYAEVSNEDLGGEGDNNKIGIKDPCRPGVKTAVEACQHADVNVKMITGYNVFTAKAIAFECGILRPNQDTDETVVEGEQFRNFSPEERLAKVDKISVMARSSPFDKFLMVQCLKQKGHVVAVTRDGTNDAPALKEADIGLSMGIQGTEVAKESSDIILDDNFASIVTVLNWGRL 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g02823 214 NCBIfam HAD-IC family P-type ATPase 134 213 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trre11g02823 214 Gene3D - 65 207 IPR023214 -
Trre11g02823 214 Gene3D - 2 64 IPR023299 GO:0000166
Trre11g02823 214 FunFam Plasma membrane calcium-transporting ATPase 2 58 207 - -
Trre11g02823 214 PRINTS P-type cation-transporting ATPase superfamily signature 79 89 - -
Trre11g02823 214 PRINTS P-type cation-transporting ATPase superfamily signature 163 182 - -
Trre11g02823 214 PRINTS P-type cation-transporting ATPase superfamily signature 187 199 - -
Trre11g02823 214 PRINTS P-type cation-transporting ATPase superfamily signature 57 68 - -
Trre11g02823 214 SUPERFAMILY HAD-like 59 209 IPR036412 -
Trre11g02823 214 PANTHER CATION TRANSPORTING ATPASE 1 213 - -
Trre11g02823 214 Pfam haloacid dehalogenase-like hydrolase 59 177 - -
Trre11g02823 214 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 1 69 IPR023299 GO:0000166
Trre11g02823 214 PRINTS H+-transporting ATPase (proton pump) signature 23 41 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trre11g02823 214 PRINTS H+-transporting ATPase (proton pump) signature 163 179 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g02823 Trre-Chr11 37295841 37296485 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g02823 1 213 Primary Pumps ATPases AT3G22910 66.372 3.43e-91 286
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g02823 K01537 - gmx:100793918 319.316