Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g02817 ATGGATATAACAGAAATTTCAATCTTGCATCATGTTGGAATCGTCTTACTTTTTCTCTGGTTGCTGTCTACATTCGATTGTTGCTCTGTTGTGTTTTATTTTGTGGCTTTGATCTATCTTTATCATGTTCATGAACGTTATGTTACAAGGTTAAGGAAGAAGTTGCAGTTTGAAGAGAGGAAACAATCTAATCAAAGAAGGGTGCTTTCTGATTCTGAATCAGTTCGGTGGTTGAACCATGCAGTTGAGAACATATGGCCTATATGTATGGAACAGATTGCATCTCAAAAGATTTTACTCCCTATCATACCTTGGTTCTTAGAGAAGTACAAACCTTGGACTGCTAAAGAAGCTATTGTTCAGCACCTATACTTGGGAAGAAGCCCACCTTTGATTACTGATATGAGGGTACTTCGCCAGACTGATGATGACCACTTGGTTCTGGAGTTAGGAATGAATTTTCTCACGGCTGATGATATGAGTGCAATACTTGCTGTAAAACTAAGAAAAAGACTTGGCTTTGGAATGACAGCTAAGCTGCATATAACGGGAATGCATGTTGAAGGGAAGGTCTTGGTAGGGGTAAAGTTTCTGAAAACATGGCCTTTTCTTAGTCGTTTGCGTGTATGCTTTGTCGAGCCTCCATATTTTCAGATGACTGTCAAACCTATTTTTACTCATGGGCTTGATGTGACAGAACTTCCAGGAATTGCTGGCTGGCTTGATAAGCTTCTGTCCATTGCTTTTGAACAGACTCTTGTTGAGCCCAATATGCTGGTTGTTGATGTCGAGAAATTTGTATCACCAGAACAAGAGCCTTGGTTTAAAGTGGATGAGAAAGACCCTGTTGCTTATGCAAAAATAGAAATTGTTGAGGCAGCCGACATGAAGCCATCAGATCTAAATGGATTCGCTGATCCTTATGTGAAAGGTCATTTGGGTGGATATAGATTCAGAACAAAGATACAAAAGAAAACACTTGCTCCAAAATGGCAAGAGGAATTTAGAATTCCAATCATAACATGGGATTCTAACAATGTGCTTGTTATTGAAGTTCGTGACAAGGACCGTTTCTATGATGATATTCTTGGGGACTGTTCTTTGAACATCAATGATTTTAGGGATGGACAAAAATATGATAAGTGGTTGCCACTACAGAATGTAAAAATGGGAAGGTTGCATTTGCGAATTACAGTTTTTGAAGATAAGGAAAAGGAAGCCGATAGTGCATGTGACCAGGAAACGATAGACATTGAGGAAAAAAAAGATTCTTTTGTAACTCAAACCACCAACAAAAGTTCTTTCTCATCCGTTTCGTCTGAAAAATTTCCAAAATTAGCAGATAATTTTGAGCCTATCAATATTGAAGGGCAACAGGAGACCGGAGTTTGGGTCCACCACCCAGGAAATGAAGTTTGCCAAACTTGGGAGCCAAGAAAAGGGAAGAATCGACGCCTCGACACAGAAATTCGTGGGGAGCCTAATGATATATCTGACAACTGTAATAATTCAACTGTATCTGAATCCTTGAACAATGACAGTAGCAGTCCTGATGATAATGCCGAAGATAAACGTCGAATGAAAACAGTTAGGAAAGGCCTGCACAAAATCGGTTCCGTATTTCGTAGGAGTCAGAAAAAGTATGACAGATCAAATTCTATCCCTGAGGAGTCTCCATCTCCACATGATAACATTAGGTCGGTAAATGCTCCTAAAGCGGTCGGTGTGAAGTTTGTTATGGATGATAATATTGGCGGATTTCCGATTGGTAAGATTCAGGTAGAAGGTGGATCAACGGAAGGGAGTGGTAGCGGCGGTCCTGATAGCCCAGCAAAGAGAGACGTCAAGGACATGGCAAAGAATATTTATAAACACGCAGAAAAATCGGCTCGTAGCTTAAAGCACGTTCTTTCTCGTAAAACAAGGAAATCTAAAGGTGATTCAGAAGCTACAGTTGAAGAAATAGAAAATGAATCTGACTCTTCTGATGATGAGTCTCTTTCAGTTCAGTCACCAATAGATGAAAGAACTCCAATTTTTTCTCAGGCTATTGCTCCAAGTAACATTGGTTCCCCAAAATCCAATCTGAACCCCGAGCCAATTCCTCGAAGCAACATTGGTTCCCCAAAATCCAATTTCAACCCTGAGGCAATTCCTCGAAGTAACATTGGTTCCCCAAAATCCAATTTAAACGAGGTTTATAATGCTCCATCTAACACCGAGCCTGAAAATGCATTTTCCCTTGAAAGATTTAGTGAAGAAGTTAAGTCGGGTGAAGTTGAACATGTTAAAGAGGAAATTGTGGCAGATAAAACGGTTGTTATTGGCAGTATAGCTGAGTAA 2343 0.3991 MDITEISILHHVGIVLLFLWLLSTFDCCSVVFYFVALIYLYHVHERYVTRLRKKLQFEERKQSNQRRVLSDSESVRWLNHAVENIWPICMEQIASQKILLPIIPWFLEKYKPWTAKEAIVQHLYLGRSPPLITDMRVLRQTDDDHLVLELGMNFLTADDMSAILAVKLRKRLGFGMTAKLHITGMHVEGKVLVGVKFLKTWPFLSRLRVCFVEPPYFQMTVKPIFTHGLDVTELPGIAGWLDKLLSIAFEQTLVEPNMLVVDVEKFVSPEQEPWFKVDEKDPVAYAKIEIVEAADMKPSDLNGFADPYVKGHLGGYRFRTKIQKKTLAPKWQEEFRIPIITWDSNNVLVIEVRDKDRFYDDILGDCSLNINDFRDGQKYDKWLPLQNVKMGRLHLRITVFEDKEKEADSACDQETIDIEEKKDSFVTQTTNKSSFSSVSSEKFPKLADNFEPINIEGQQETGVWVHHPGNEVCQTWEPRKGKNRRLDTEIRGEPNDISDNCNNSTVSESLNNDSSSPDDNAEDKRRMKTVRKGLHKIGSVFRRSQKKYDRSNSIPEESPSPHDNIRSVNAPKAVGVKFVMDDNIGGFPIGKIQVEGGSTEGSGSGGPDSPAKRDVKDMAKNIYKHAEKSARSLKHVLSRKTRKSKGDSEATVEEIENESDSSDDESLSVQSPIDERTPIFSQAIAPSNIGSPKSNLNPEPIPRSNIGSPKSNFNPEAIPRSNIGSPKSNLNEVYNAPSNTEPENAFSLERFSEEVKSGEVEHVKEEIVADKTVVIGSIAE 780
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g02817 780 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 71 264 IPR031468 GO:0008289
Trre11g02817 780 MobiDBLite consensus disorder prediction 591 742 - -
Trre11g02817 780 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 282 401 IPR035892 -
Trre11g02817 780 Pfam C2 domain 287 385 IPR000008 -
Trre11g02817 780 CDD C2 287 385 - -
Trre11g02817 780 MobiDBLite consensus disorder prediction 477 494 - -
Trre11g02817 780 MobiDBLite consensus disorder prediction 495 516 - -
Trre11g02817 780 PANTHER C2 DOMAIN-CONTAINING PROTEIN-LIKE 1 694 - -
Trre11g02817 780 Gene3D C2 domain 270 401 IPR035892 -
Trre11g02817 780 MobiDBLite consensus disorder prediction 475 568 - -
Trre11g02817 780 MobiDBLite consensus disorder prediction 664 742 - -
Trre11g02817 780 MobiDBLite consensus disorder prediction 610 634 - -
Trre11g02817 780 CDD SMP_SF 95 262 - -
Trre11g02817 780 ProSiteProfiles C2 domain profile. 269 383 IPR000008 -
Trre11g02817 780 SMART C2_3c 285 382 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g02817 Trre-Chr11 37232982 37241106 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g02817 278 397 Lipid Metabolism Gene Families AT3G61300 32.000 1.01e-08 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g02817 - - gmx:100779958 1044.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g02817 11 37232982 37241106 Trre11g02817 11 37232982 37241106 ECH