Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g02767 ATGGCGGGAGAAGAAGAAAAAGAACGGCACAAAAACAATGGCGCGGAAACGGTGTCGTTTGAGGGTTCGGTTAAAGAAAAACAACCTATGGAAGAAACGGCGTCGTTTCAACTTGATACCACTGTGACAAGTAAGCCTGTTATTCTTTATTACAGAAAGAAAAAGAAAACCGGAAGAGAGAGTAATAATACACAGAACAATCAAGTGTTGTTAAAGAAGGAAGAAGAAACGGTTGCTAAAGCTGACGATGACGTGGCAGATTATTCTGTTCAAGTTGCCGCCGCCGCTGCTTCGGTTTCCGGCGGAAAGAGTAAAACGACGGCGGAAGGTGCCTCCTCCGGCGTTGCTTCAAGAAAGAGTGATCGTCGCGGAAAGAGTACCGTGGTGGCCATGGAAGCAGCGAAGTTGAAGAACAAAGCTGGTAGTAGTAGTAGTAGAAAAAGGAAAGAGATTGATGAGAATACTGTAAATGAAATGGATTTTCCTGACAATAAAGGCTATGCTTTAAGAAATGCTTCAAAAATCAAACATACAAATACTACTCATGAGGTTGATCCAAAAACCGAAAAGAAAAATCATGCTAAGAAAAATTGCAATGAAGATGATCGGTTCACGTCCTTAATGTGTCATCAATGTCAGAGAAATGACAAGGGAAGGGTTGTTAGATGCAAGAAATGCAAAAGGAAAAGATTTTGTGTATGCTGTATTAACAATTGGTATCCTTACTTGAAAGAGGATGATATTGCTGAGGCATGTCCTGTGTGTTGTGGCAATTGCAATTGCAAAACCTGTTTGCAATCAACTAAACTTATCAATGAAATTAAATATAAGAAGGCACCCAACAAAGATCATGAGGTTGCGCTCTCCAAGTATATGCTGAAAATTCTTCTTCCGTATTTAATACGATTGGATCAAGAACAAACGGTCGAGAAGGAGTTCGAAGCCAAGAGACAAGGGCTCCCACTCTCTGAGCTAAAAATTAAAGTAGCTGATTCATTTAGTGATGAGCGCGTGTACTGTGACAACTGCAAAACGTCAATATTTGACTACCACAGAAGCTGTACAGAATGCTCCTTTGACCTTTGTCTTCTCTGTTGCTGCGAGCTTCGTCGTGGGCAACTTCTAGGTGGTGCAGATACAGTTGATTTCGAGTTTATTTCCCGAGGGAAAAATTACCTGCATGGTGGTGAAGATGCAAAGGAAATAATCAGAGAGAAAGTATCTCATGATGAGATTCGTGAATGGTCAAAATCTAGGTTGTATGCAGATAGTGAAGGTAACATTCCATGTCCAAAAGCCAATAACGAATGTGATCATGGTTACCTTGAACTGAGAAGCATATTGCCGCCAAATTGCATCTCCGAGTTAGTATGTAAAGCAAAAGAACTTGCAGAATCAATTAAACTTCAAGAAGCAGAGGAACCTCTTGATAATAGGTGCTCTTGTTTGAAGTCTGTTAGGAACACAAAAGATATACACAATAACACAGGGGAAGCAACTTTTCGTGAAGATAGCAGTGGCAACATTTTGTACTGTCCTAGGGCTATAGATCTAAATCATGAAGGTTTAAGACATTTTCAATGGCACTGGAGGAAAGGGGAACCTATCATTGTCAGCAATGTACTTGAATGCACTTCTGGTTTAAGCTGGGAGCCGCTTGTCATGTGGCGTGCATTTCGTCAAAGAAGGAAGTCCAAGAACAACTCACTTTATGATGTGAAGGCAATTGATTGCTTAGATTGGTGCGAGGTAGATATTAATGTGCACCAATTCTTTACTGGGTACACAAATGGTCGCAAGGATTTCAAAGATTGGCCTCAGGTGTTGAAATTGAAAGATTGGCCTCCTTCTAATTTATTTGAAGAAAGTTTGCCTCGTCATTGTGCCGAGTTCATATCTTCCCTGCCGTATAAAGAATACACAAATCCTTTCAATGGTGCTCTTAACCTTGCTGTGAAGTTGCCTGATAATGTTCAAAAGCCAGACATGGGACCAAAAACATATATTGCTTATGGATTTGCTCAGGAGCTTGGACGGGGAGATTCTGTGACTAAGCTCCATTGTGATATGTCTGATGCAGTAAATGTGTTGACTCATATTGCTAAGGTGGAACTGGAACCTGCGACCATGGCTGAAATTAAGAAATTGACACAAAAACACCTTGAGCAAGACAAGAGGGAGCTACATGGTCATAATCAGGATGGAGAAACAAATGTTGACATGGTTGATAATTTGTCTTCTTCCATAAATGCTTCAGATGGAGGGGATTCTTTAGACGGTGCTCTCTGGGATATTTTCCGGAGAGAAGATGTACCTGTATTGGAGGAATATCTGAATAAGCATTTCAGAGAGTTCAGGCATGTTCATTGCTCTCCTTTAGTCGAGGTTATCCACCCGATACATGATCAGACCTTTTATCTAACCATCAAGCATAAGAAGAGGCTTAAAGAGGAGTATGGAATTGAGCCTTGGACTTTTGTTCAGAAACTAGGAGACGCTGTTTTCATTCCAGCTGGTTGTCCCCACCAAGTCAGAAATCTTAAGTCATGTACCAAGGTTGCACTTGATTTTGTCTCTCCTGAAAATGTTGGTCAGTGCTTTCATTTGACTGAGGAGTTTCGCAAACTTCCAGTAAATCACAGGTCCGCAGAGGATAAACTGGAGGTGAAGAAAATGATTATACATGCTATGCTTGATGTAGTCACCAAGTTGGAGGAAACAAGGTCTAAAGAAACTGGAGTTCCATTGTAA 2751 0.4089 MAGEEEKERHKNNGAETVSFEGSVKEKQPMEETASFQLDTTVTSKPVILYYRKKKKTGRESNNTQNNQVLLKKEEETVAKADDDVADYSVQVAAAAASVSGGKSKTTAEGASSGVASRKSDRRGKSTVVAMEAAKLKNKAGSSSSRKRKEIDENTVNEMDFPDNKGYALRNASKIKHTNTTHEVDPKTEKKNHAKKNCNEDDRFTSLMCHQCQRNDKGRVVRCKKCKRKRFCVCCINNWYPYLKEDDIAEACPVCCGNCNCKTCLQSTKLINEIKYKKAPNKDHEVALSKYMLKILLPYLIRLDQEQTVEKEFEAKRQGLPLSELKIKVADSFSDERVYCDNCKTSIFDYHRSCTECSFDLCLLCCCELRRGQLLGGADTVDFEFISRGKNYLHGGEDAKEIIREKVSHDEIREWSKSRLYADSEGNIPCPKANNECDHGYLELRSILPPNCISELVCKAKELAESIKLQEAEEPLDNRCSCLKSVRNTKDIHNNTGEATFREDSSGNILYCPRAIDLNHEGLRHFQWHWRKGEPIIVSNVLECTSGLSWEPLVMWRAFRQRRKSKNNSLYDVKAIDCLDWCEVDINVHQFFTGYTNGRKDFKDWPQVLKLKDWPPSNLFEESLPRHCAEFISSLPYKEYTNPFNGALNLAVKLPDNVQKPDMGPKTYIAYGFAQELGRGDSVTKLHCDMSDAVNVLTHIAKVELEPATMAEIKKLTQKHLEQDKRELHGHNQDGETNVDMVDNLSSSINASDGGDSLDGALWDIFRREDVPVLEEYLNKHFREFRHVHCSPLVEVIHPIHDQTFYLTIKHKKRLKEEYGIEPWTFVQKLGDAVFIPAGCPHQVRNLKSCTKVALDFVSPENVGQCFHLTEEFRKLPVNHRSAEDKLEVKKMIIHAMLDVVTKLEETRSKETGVPL 916
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g02767 916 SMART cupin_9 624 874 IPR003347 -
Trre11g02767 916 MobiDBLite consensus disorder prediction 95 127 - -
Trre11g02767 916 MobiDBLite consensus disorder prediction 1 15 - -
Trre11g02767 916 Pfam JmjC domain, hydroxylase 761 857 IPR003347 -
Trre11g02767 916 Gene3D Cupin 509 883 - -
Trre11g02767 916 ProSiteProfiles Zinc finger RING-type profile. 209 255 IPR001841 -
Trre11g02767 916 MobiDBLite consensus disorder prediction 52 72 - -
Trre11g02767 916 Coils Coil 453 473 - -
Trre11g02767 916 Coils Coil 71 91 - -
Trre11g02767 916 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 26 911 IPR045109 GO:0032454|GO:0033169
Trre11g02767 916 MobiDBLite consensus disorder prediction 1 38 - -
Trre11g02767 916 FunFam Transcription factor jumonji domain-containing protein 507 883 - -
Trre11g02767 916 SUPERFAMILY Clavaminate synthase-like 516 897 - -
Trre11g02767 916 ProSiteProfiles JmjC domain profile. 643 874 IPR003347 -
Trre11g02767 916 MobiDBLite consensus disorder prediction 100 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g02767 Trre-Chr11 36191750 36198673 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Trre11g02767 JmjC 9.7e-15 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g02767 K15601 - gmx:100780803 1003.05