Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g02754 ATGGACATTCCAGAAGGTGTAAGCATCAAGGTACACGCTAAACTCATCGAAGTTGAAGGTCCACATGGCAAATTGATTCGTGATTTCAAGCATTTGAATCTTGATTTTCAACTCATTACCGATGAAGAAGGGAAAAAGAAATTGAAGGTTGAAGCTTGGTTTGGATCAAGAAAAACTTCTGCTGCTATTCGTACTGCTCTTAGTCATGTTGATAATCTCATCACTGGTGTTACTAAGGGTTATCGTTACAAGATGCGATTTGTTTATGCTCATTTTCCTATTAATGCTAGCATCACTAATAGTAATTCTGCTATTGAGATTCGTAATTTTCTTGGCGAAAAGAAGGTGAGGAAAGTGGACATGCTTCAAGGTGTTACTGTCCTTCGATCTGAAAAGGTAAAGGATGAGTTGATTTTGGACGGAAATGACATTGAACTTGTTTCCAGATCTTGTGCCCTCATTAACCAGAAATGCCATGTTAAGAACAAAGATATCCGGAAGTTTCTAGATGGTATCTATGTTAGCGAGAGGGGGACAATAGCGGAGGAATAG 552 0.3877 MDIPEGVSIKVHAKLIEVEGPHGKLIRDFKHLNLDFQLITDEEGKKKLKVEAWFGSRKTSAAIRTALSHVDNLITGVTKGYRYKMRFVYAHFPINASITNSNSAIEIRNFLGEKKVRKVDMLQGVTVLRSEKVKDELILDGNDIELVSRSCALINQKCHVKNKDIRKFLDGIYVSERGTIAEE 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g02754 183 Pfam Ribosomal protein L6 3 80 IPR020040 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Trre11g02754 183 Pfam Ribosomal protein L6 92 171 IPR020040 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Trre11g02754 183 SUPERFAMILY Ribosomal protein L6 81 177 IPR036789 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Trre11g02754 183 FunFam 60S ribosomal protein L9 1 80 - -
Trre11g02754 183 SUPERFAMILY Ribosomal protein L6 2 80 IPR036789 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Trre11g02754 183 FunFam 60S ribosomal protein L9 81 183 - -
Trre11g02754 183 Gene3D - 81 183 IPR036789 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Trre11g02754 183 PANTHER 60S/50S RIBOSOMAL PROTEIN L6/L9 1 181 IPR000702 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Trre11g02754 183 ProSitePatterns Ribosomal protein L6 signature 2. 156 177 IPR002359 GO:0003735|GO:0005840|GO:0006412
Trre11g02754 183 PIRSF RPL6p_RPL6a_RPL9e_RPL9o 1 180 IPR000702 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Trre11g02754 183 Gene3D - 1 80 IPR036789 GO:0003735|GO:0005840|GO:0006412|GO:0019843
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g02754 Trre-Chr11 36035484 36037190 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g02754 1 183 Cytoplasmic Ribosomal Protein Gene Family AT1G33140 81.522 3.74e-112 315
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g02754 K02940 - csav:115716386 340.117