Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g02753 ATGAAAACCATTCTCTCGTCCGAAACAATGGACATTCCAGAAGGTGTAAGCATCAAGGTACACGCTAAACTCATCGAAGTTGAAGGTCCACATGGCAAATTGATTCGTGATTTCAAGCATTTGAATCTTGATTTTCAACTCATTACCGATGAAGAAGGGAAAAAGAAATTGAAGGTTGAAGCTTGGTTTGGATCAAGAAAAACTTCTGCTGCTATTCGTACTGCTCTTAGTCATGTTGATAATCTCATCACTGGTGTTACTAAGGGTTATCGTTACAAGATGCGATTTGTTTATGCTCATTTTCCTATTAATGCTAGCATCACTAATAGTAATTCTGCTATTGAGATTCGTAATTTTCTTGGCGAAAAGAAGGTGAGGAAAGTGGACATGCTTCAAGGTGTTACTGTCCTTCGATCTGAAAAGGTAAAGGATGAGTTGATTTTGGACGGAAATGACATTGAACTTGTTTCCAGATCTTGTGCCCTCATTAACCAGAAATGCCATGTTAAGAACAAAGATATCCGGAAGTTTCTAGATGGTATCTATGTTAGCGAGAGGGGGACAATAGCGGAGGAATAG 579 0.3886 MKTILSSETMDIPEGVSIKVHAKLIEVEGPHGKLIRDFKHLNLDFQLITDEEGKKKLKVEAWFGSRKTSAAIRTALSHVDNLITGVTKGYRYKMRFVYAHFPINASITNSNSAIEIRNFLGEKKVRKVDMLQGVTVLRSEKVKDELILDGNDIELVSRSCALINQKCHVKNKDIRKFLDGIYVSERGTIAEE 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g02753 192 SUPERFAMILY Ribosomal protein L6 1 89 IPR036789 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Trre11g02753 192 PANTHER 60S/50S RIBOSOMAL PROTEIN L6/L9 1 190 IPR000702 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Trre11g02753 192 FunFam 60S ribosomal protein L9 90 192 - -
Trre11g02753 192 Gene3D - 1 89 IPR036789 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Trre11g02753 192 PIRSF RPL6p_RPL6a_RPL9e_RPL9o 1 189 IPR000702 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Trre11g02753 192 FunFam 60S ribosomal protein L9 1 89 - -
Trre11g02753 192 Gene3D - 90 192 IPR036789 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Trre11g02753 192 ProSitePatterns Ribosomal protein L6 signature 2. 165 186 IPR002359 GO:0003735|GO:0005840|GO:0006412
Trre11g02753 192 Pfam Ribosomal protein L6 101 180 IPR020040 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Trre11g02753 192 Pfam Ribosomal protein L6 12 89 IPR020040 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Trre11g02753 192 SUPERFAMILY Ribosomal protein L6 90 186 IPR036789 GO:0003735|GO:0005840|GO:0006412|GO:0019843
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g02753 Trre-Chr11 36035484 36037217 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g02753 1 192 Cytoplasmic Ribosomal Protein Gene Family AT1G33140 82.383 1.11e-118 332
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g02753 K02940 - csav:115716386 355.91