Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g02717 ATGCGGCAAGTTGCAATGGCTTTTAAGTGTATCCTACTTATATATTACAAAAAGGGGAAAGGTCATAACTTCCGTCGGCAGGCTCAAATGTTAACTCTTGTTGAGTACACGCTGCTGTTGTATCGATTGTATTTAACTTTCAAGCTAACATCCGTTGTTGAGAAGGTCCAGTGCTTCATTTCTGCCTTGAAAGCATTATCAAGAAAGGAAGTTCATTATGGGGTCTATGCCACAGCGGAGCAGGTAACAGCTGCTGGTGACCTATGTGCTATATGCCAGGAGAAGATGCATTCCCCCATCTTGCTACGTTGTAAACACATTTTCTGCGAAGATTGTGTATCTGAATGGTTTGAAAGAGAAAGGACTTGCCCTCTTTGCAGAGCATTGGTTAAAGCAGCTGATCTTCGGACCTTCGGAGATGGATCAACAAGTTTGTATATGTATTTGCATAGGCTTTTATTCAATTATGTTAACTACGTTGTTGCACTTGGAAGTGCTGAAATTGCCATGTTATAA 516 0.4109 MRQVAMAFKCILLIYYKKGKGHNFRRQAQMLTLVEYTLLLYRLYLTFKLTSVVEKVQCFISALKALSRKEVHYGVYATAEQVTAAGDLCAICQEKMHSPILLRCKHIFCEDCVSEWFERERTCPLCRALVKAADLRTFGDGSTSLYMYLHRLLFNYVNYVVALGSAEIAML 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g02717 171 PANTHER UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN 2 43 IPR044235 GO:0061630|GO:1904294
Trre11g02717 171 Pfam Zinc finger, C3HC4 type (RING finger) 87 131 - -
Trre11g02717 171 ProSiteProfiles Zinc finger RING-type profile. 89 127 IPR001841 -
Trre11g02717 171 CDD RING-HC_RNFT1-like 87 127 - -
Trre11g02717 171 ProSitePatterns Zinc finger RING-type signature. 104 113 IPR017907 -
Trre11g02717 171 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 64 138 IPR013083 -
Trre11g02717 171 SUPERFAMILY RING/U-box 81 132 - -
Trre11g02717 171 SMART ring_2 89 126 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g02717 Trre-Chr11 35273385 35277849 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g02717 1 149 C3H Transcription Factor Family AT5G01960 67.045 2.32e-82 248
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g02717 - K22379 gmx:100784614 241.506