Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g02663 ATGAAAATTCAGTGCAACGTGTGTGAAGGTGCAGAAGCTAAGGTTCTTTGTTGTGCTGATGAAGCTGCTTTGTGTTGGGAATGTGATGAGAAAGTTCATGCTGCTAATAAGCTTGCTAGTAAACATCAGAGAGTTCCTCTTTCTACATCTTCTTCTCATATGCCTAAATGTGATATTTGTCAGGAAGCATTCGGCTATTTCTTTTGTCTCGAGGATCGCGCTTTACTCTGTCGAAAATGTGATTTAGCAATACACACTGCAAACGCCTTTGTCTCAGGACATCAAAGGTTTCTTCTCACCGGTGTAAAAGTCGGTCTTGAAGATGCTGAACCCGGCGCTTCCTCAAATTCCATGAAATCAGATTCCTGTGAGAAATTTTCCGATACAAAATCTTCTTCTGTATCTAGAAAGGTTTCCACAATGCCTCAGTCATCAGAATACAATGAAATGTTTCCTACTGATCAAGGTGGAAGAGTTATTGAATTTCCACCGGCAAAGGTTTCTTATGGCGGCGGTTCTTCATCTGGAAACATGTCACAGTGGACAATTGATGAATTTTTCGGCGTAAATGATTTCAATCAGAATTATAACTACATTGATGGATCATCAAGGGCTGACAGTGGTAAGCTTGAGGATTCCGATTCTCCTATTTTAAGATCCAACGAAGAAGAAATGGAGTACGACGACTACATGGACCGCGTACCAGATTCATCTTGGACCGTTCCTCAAATCCCTTCACCTCCTACAGCTTCTGGACTACACTGGCCGAAAAACCCTCGGTATGCATCCGATAATGCTCTATTTGTTCCTGACATAGGCATTTCTACCATGCAACAACAACCTCAGAATAGTAGTAATTTTTCAAGACCGCGGTATCATCACTAA 885 0.4158 MKIQCNVCEGAEAKVLCCADEAALCWECDEKVHAANKLASKHQRVPLSTSSSHMPKCDICQEAFGYFFCLEDRALLCRKCDLAIHTANAFVSGHQRFLLTGVKVGLEDAEPGASSNSMKSDSCEKFSDTKSSSVSRKVSTMPQSSEYNEMFPTDQGGRVIEFPPAKVSYGGGSSSGNMSQWTIDEFFGVNDFNQNYNYIDGSSRADSGKLEDSDSPILRSNEEEMEYDDYMDRVPDSSWTVPQIPSPPTASGLHWPKNPRYASDNALFVPDIGISTMQQQPQNSSNFSRPRYHH 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g02663 294 MobiDBLite consensus disorder prediction 113 151 - -
Trre11g02663 294 SMART bboxneu5 52 99 IPR000315 GO:0008270
Trre11g02663 294 SMART bboxneu5 4 47 IPR000315 GO:0008270
Trre11g02663 294 CDD Bbox1_BBX-like 5 47 - -
Trre11g02663 294 Pfam B-box zinc finger 4 47 IPR000315 GO:0008270
Trre11g02663 294 Pfam B-box zinc finger 54 95 IPR000315 GO:0008270
Trre11g02663 294 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 278 - -
Trre11g02663 294 Gene3D Classic Zinc Finger 1 93 - -
Trre11g02663 294 MobiDBLite consensus disorder prediction 205 226 - -
Trre11g02663 294 MobiDBLite consensus disorder prediction 110 155 - -
Trre11g02663 294 MobiDBLite consensus disorder prediction 201 257 - -
Trre11g02663 294 FunFam B-box zinc finger protein 22 1 93 - -
Trre11g02663 294 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Trre11g02663 294 CDD Bbox1_BBX-like 56 99 - -
Trre11g02663 294 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g02663 Trre-Chr11 33452731 33454974 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g02663 1 276 C2C2-CO-like Transcription Factor Family AT1G78600 47.604 2.42e-88 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Trre11g02663 zf-B_box 8.8e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g02663 - - gmx:100790959 442.195
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g02663 11 33452731 33454974 Trre11g02663 11 33452731 33454974 ECH