Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g02644 ATGAAGCTTATCATCATGAACATGTCTTTCCCTCTATTATTCCAAATTTTGCTTCTTGTCATTTGTTTGATCTCTTCATTTGCTAGTGGAGCTACTCTATTAGAAGAAGAAGTACAAGTTATGAAAGATATAGCTAAGAAACTTGGTAAGAAGGATTGGGACTTCAGCAAAGATCCATGTAGTGGAGAAAGTAACTGGACATCTTCTGTACAAGTCAGTGGATTTCAAAATGCTGTGACTTGCAATTGTTCTTTTGCCAATGCCACTGTCTGCCATATTGTTAGCATTGTTCTGAAGTCACAAAATCTTTCTGGCACACTTCCAAGTGAATTTGTAAAATTGCCTTACCTCCAAGAAATTGATCTCACACGTAACTACCTTAATGGTACAATCCCTACACAATGGGCTTCCATCAATCTTGTCAACATTTCACTATATGGAAACCGATTAACGGGTCCAATCCCAAAAGAATTTGGAAAAATCACCACCCTGCAAAAGTTGGATTTAGAGTTCAATCAATTATCTGGACAGCTTCCTCCGGAGCTTGGGAATCTTCACCAACTTGAAATTTTGCTTCTTAACTCCAATAATTTTACTGGAAATTTACCTGCAACATTTGTTAAGCTCACTAAGTTGAAGCACATTCGACTCGGCGATAATCAATTCTTTGGAACTATACCTGATTTCATTCAAAGTTGGGCAAGTCTTGAGAGGCTGGTGATGCAAGGGAGTGGTTTGTGTGGACCAGTTCCGTCTGGAATTTCATATCTAAAAAACCTCACTGACTTGAGAATAAGTGACTTGAAAGGATCAGATTTTCTTTTTCCACAACTTCGTAACTTGACAAATCTCGAAACATTAATACTGAGGAGTTGCAATCTTATAGGAACAGTTCCTGAATATCTTGGAAATATTACCAATTTAAGAAACTTAGACCTCAGTTTTAACAAATTAAGTGGACAGATTCCAAACACCTTGGGCAGCCTCGAGAACATAAACATACTATACTTAACTGGAAACAATTTTAATGGACCACTACCAAATTGGATTGCTAGACCAGACTACACAGATCTATCATATAACAACTTGAGCATTGAAAATCCAGAGCAGTTGACATGTCAACAAGGAACCGTGAACTTGTTTGCATCATCTTCAAAGGGAAGTAACTTGGGAATGGTTTCATGTTTGGGGAACATTAATTGTCCTAAAACTTTGTACTCACTTCATATAAATTGTGGTGGTAAGCGTATAACTTCTAATAAAAGCTTGACATATGATGATGATTCAAATGAAGTTGGACCAGCAAGCTTTCACCGAACTGAATCGAATTGGGCCCTTAGCAACACTGGTCACTTCTTTGATAGTGGCCTTGCGGACTACTATACTTGGTCTAATAAAACTAACCTTTCCATGGAAAATGCCGAATTGTATATGGATGCACGTGTTTCTCCTATTTCTCTAACTTATTATGGATATTGCCTCGGAAATGGAAACTACACGGTAAATCTCCATTTCGCAGAGATAATGTTCACCGATGATCAAACATATAATAGCCTTGGAAGGCGTATATTTGACATCTATATTCAGAGAAGGTTGGTGCTGAAGGATTTCGATATTGCAGAAGAAGCTGGTGGAGTTGGAAAGGCAATTATAAAGAAGTTTACTGCTATTGTGACTAATAATACCTTGGAGATTCGCCTTCATTGGGCTGGGAAAGGAACAACTGGTATTCCATTTGGATCAGTATATGGTCCTCTTATATCGGCTATATCGGTTGATCCTGATTTTACATCCTCGGTGGAAAAGGGAAGTGGCATACCTGTGTGGGATATTGTTATAATTGTAGTTGGCGGAGTACTGGTTATCTTCATGGTATTTGGTATCGTTCAGTGGAGAAGACGTCGACGACAAATAGGTCCATTAGAAAAAGAGCTAAATGGTTTAGATTTCCAACCTGGGTTATTTTCATTACGACAAATCAAAGCAGCAACTAACAACTTCGATATTGCCTTTAAGATTGGAGAAGGAGGGTTTGGTCCTGTTTTCAAGGGTGTTCTTCCGGATGGAACAATTGTAGCGGTTAAGCAACTTTCTTCTAAATCAAAGCAAGGGAATCGCGAGTTTATAAATGAGATTGGCCTTATTTCAGCTTTGCAACACCCTTGTCTAGTTAAGCTCTATGGTTGCTGTATGGAGGGAGATCAGTTGTTGCTGATATATGAATACATGGAAAATAATAGCCTTGCTCGTGCTTTGTTTGCCAAAGAAAAAGTTGAACTGAAATTGGATTGGCGAACGAGGAAGAAAATTTGTGTCGGTATTGCTAGAGGTTTGGCTTACCTTCATGAAGAGTCGAGGCTAAAGATAGTTCACAGAGACATCAAGGCAACTAATGTGTTACTCGATAAAGATCTCAATCCAAAGATATCTGATTTTGGTTTAGCCAAACTTAAAGATGACGGACACACCCACATAACCACTAGAGTAGCAGGCACATACGGATATATGGCTCCAGAATATGCAATGCATGGATATTTGACCGAGAAAGCGGACGTTTATAGTTTTGGAGTTGTTGCCTTGGAAATTGTTAGTGGGAAGCACAACACCATGAATTGGCCTAAGGATGAATGCTTCTCTCTTGTTGATTGGGTGCATCTCTTGAAGGAAGAAGGTAACATAATGGAACTAGTTGATGAGAGGTTAGGTGAAGAATTCAAAAAAGAGGAAGCAATGATTATGATCAATGTGGCTCTTTTATGCACTCATGTTTCTCCAATGAACAGGCCAACCATGTCATCAGTGGTAAACATGCTTGAAGGAAAATCTGTTGTTCAAGAAGTTGTTTCTGACACAAGCCAAGTTTTTGAAGGCAAGAAATTGGAGATGATTCAACAATATTACCAACAAAGTGAAAAAAATGATACACCTGAGATTGAGACTCAAGAAGAGAGCATCATAATAGATTCAACTGCGGAGTATATGTCTGATGGAGATCTACATTCTATCAGCAGAGATTCTCCTTATAGAAGTTCCATTACTTTGTAA 3045 0.3849 MKLIIMNMSFPLLFQILLLVICLISSFASGATLLEEEVQVMKDIAKKLGKKDWDFSKDPCSGESNWTSSVQVSGFQNAVTCNCSFANATVCHIVSIVLKSQNLSGTLPSEFVKLPYLQEIDLTRNYLNGTIPTQWASINLVNISLYGNRLTGPIPKEFGKITTLQKLDLEFNQLSGQLPPELGNLHQLEILLLNSNNFTGNLPATFVKLTKLKHIRLGDNQFFGTIPDFIQSWASLERLVMQGSGLCGPVPSGISYLKNLTDLRISDLKGSDFLFPQLRNLTNLETLILRSCNLIGTVPEYLGNITNLRNLDLSFNKLSGQIPNTLGSLENINILYLTGNNFNGPLPNWIARPDYTDLSYNNLSIENPEQLTCQQGTVNLFASSSKGSNLGMVSCLGNINCPKTLYSLHINCGGKRITSNKSLTYDDDSNEVGPASFHRTESNWALSNTGHFFDSGLADYYTWSNKTNLSMENAELYMDARVSPISLTYYGYCLGNGNYTVNLHFAEIMFTDDQTYNSLGRRIFDIYIQRRLVLKDFDIAEEAGGVGKAIIKKFTAIVTNNTLEIRLHWAGKGTTGIPFGSVYGPLISAISVDPDFTSSVEKGSGIPVWDIVIIVVGGVLVIFMVFGIVQWRRRRRQIGPLEKELNGLDFQPGLFSLRQIKAATNNFDIAFKIGEGGFGPVFKGVLPDGTIVAVKQLSSKSKQGNREFINEIGLISALQHPCLVKLYGCCMEGDQLLLIYEYMENNSLARALFAKEKVELKLDWRTRKKICVGIARGLAYLHEESRLKIVHRDIKATNVLLDKDLNPKISDFGLAKLKDDGHTHITTRVAGTYGYMAPEYAMHGYLTEKADVYSFGVVALEIVSGKHNTMNWPKDECFSLVDWVHLLKEEGNIMELVDERLGEEFKKEEAMIMINVALLCTHVSPMNRPTMSSVVNMLEGKSVVQEVVSDTSQVFEGKKLEMIQQYYQQSEKNDTPEIETQEESIIIDSTAEYMSDGDLHSISRDSPYRSSITL 1014
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g02644 1014 ProSiteProfiles Leucine-rich repeat profile. 307 330 IPR001611 GO:0005515
Trre11g02644 1014 CDD STKc_IRAK 673 940 - -
Trre11g02644 1014 Gene3D Transferase(Phosphotransferase) domain 1 743 955 - -
Trre11g02644 1014 Pfam Protein kinase domain 672 936 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre11g02644 1014 Gene3D Phosphorylase Kinase; domain 1 635 742 - -
Trre11g02644 1014 SUPERFAMILY L domain-like 87 363 - -
Trre11g02644 1014 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 405 595 - -
Trre11g02644 1014 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 275 370 - -
Trre11g02644 1014 ProSiteProfiles Protein kinase domain profile. 667 948 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre11g02644 1014 Gene3D Ribonuclease Inhibitor 34 197 IPR032675 -
Trre11g02644 1014 SUPERFAMILY Protein kinase-like (PK-like) 649 945 IPR011009 -
Trre11g02644 1014 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 17 968 - -
Trre11g02644 1014 ProSitePatterns Serine/Threonine protein kinases active-site signature. 789 801 IPR008271 GO:0004672|GO:0006468
Trre11g02644 1014 SMART serkin_6 667 938 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre11g02644 1014 Gene3D Ribonuclease Inhibitor 198 408 IPR032675 -
Trre11g02644 1014 FunFam Putative LRR receptor-like serine/threonine-protein kinase isoform A 202 269 - -
Trre11g02644 1014 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase isoform A 37 196 - -
Trre11g02644 1014 Pfam Leucine Rich Repeat 307 329 IPR001611 GO:0005515
Trre11g02644 1014 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 636 742 - -
Trre11g02644 1014 Pfam Malectin domain 407 590 IPR021720 -
Trre11g02644 1014 Gene3D - 409 594 - -
Trre11g02644 1014 FunFam Putative LRR receptor-like serine/threonine-protein kinase 743 950 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g02644 Trre-Chr11 33141257 33150953 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g02644 24 968 Receptor kinase-like Gene Family AT1G53420 54.097 0.0 999
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre11g02644 Pkinase 3e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g02644 - - psat:127081874 1598.56