Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g02643 ATGAGCACTTCCTCTCAATTTCTCTTCCTTTCAATAACTGTCATTTGGTTCATATCTCTAACAACTTTTGCTGCTACTACCATTCACCCTGTCGAAAAGAAAGCCCTCGAAGATATAGCTAAATCGCTTGGTAAGAAAGGTTGGAATTTCAACATAGATCCGTGCAGCAACAAATCTAACTGGGTTACGCCTCCCATACCAAATATCAAAAGTAACAATTCCGAAGTGACGAATGAAGTCACATGTAACTGCTCTGTTGCTGGTGATAACTTCTGCCATGTTGTTAACATAAGTTTGAGTGGACAAAGTCTCCCCGGCACTCTCCCACCGGAACTGAACAAGTTGCGTTACCTTCAAATTATTGAGCTCTCTCGCAATTACTTGACTGGCACAATTCCTAAAGAATGGGGCACAATGACGAATCTTGTTAAAATTTCTCTCCATGGAAATCGATTAACGGGTTCAATACCAGCGGAGATTGCAAAGATATCTACTCTACAAATTTTGGAGGTATGGATCAATCAAATGTCTGGAAATCTTCCTCCCGAGCTTGGGAATCTAACCCAAATTCGAACACTGAGAGTTTCCTCTAACAATTTTACTGGAGAATTACCGGTGACATTGGCAAACCTCACTACATTGCAAGATTTCCAAATTGACGACAACGAATTCTCTGGAAAGATACCTGATTATATTCAGAACTGGAGAAGTATCAATAAACTAATGATTCAAGGAAGTGGATTAAGTGGGCCGATTCCTTCTGGAATTTCACTTTTGACAAACTTAACTGACTTGAGAATCAGTGATTTGAATGGATCTGAATATGCACCTTTGCCGCAACTTAATAATATGGCATTGTTAAAAATACTGGTTCTAAGGAATTGCAACATCAACGGAACACTACCTAAATATCTCGGGAATATGACAACATTAAAATACTTAGACCTCAGCTTTAACAAAGTAAGTGGAACAGTTCCGACGACCTATGCTTCTGCTGACACAAAGTTGACATACATATTTTTAACCGGAAACCTTCTCACTGGACAAGTGCCTCCTTGGGAAAAGAAGAATGTCAATGCAGATCTTTCATACAATAACTTCAGCATCATCCAAGGGAGTCAAGTATGTCACGATGAAAAAGTGAACTTGTTTTCTACCTCATGGGCACACAATGACATAGGAACAGATTCGTGTTTGAGAGAATGTCCCAAACCCTCATACACCCTTCATATAAATTGTGGTGGAAATAAAGCAAGAGTCAACAACACAAGCTATGATGTTGATTTAGAATTATCTGGATCAGCTAGATTCCTTGCCAGTCACACGGGAAAATGGGCATCTAGCACCACTGGTGCATTCATTGATAGTGATCAACAGGCAGATAGTTATATCCGAAAAAATACCTCTACACTTACTATGGTGGATGCTGAATTGTACATGACGGCACGTGTTTCTCCTATTTCTTTGACTTATTTTGCATTTTGCCTGGAAAATGGAAGATACACAGTAGATCTACACTTTGCTGAAATAATGTTCATAAACGATCAAACTTATGGTAGTCTTGGAAGGCGTCTATTTGATATCTATCTTCAGGGAAAGCTGGTGCAAAAGGACTTTAATATTGAAGAAGAAGCAGGAGGAGTTGGTAAGAAAGTCGTAAAGCGATTCAAAAAAGTTATTGTTACTAATAATACATTAGAGATCCGTTTATATTGGGCTGGAAAAGGGAGAGAGGCTCTCCCAGATAAATCAGTGTATGGTCCTCTTATATCAGCTATATCAGCAAAATCTGATTCTGCACCTAGAAGCATGTCTGCAGGAACTGTGGCTGGACTTGTGGTTGCAGCAACAATTGTTATCATTTTATTATTTGGTATACTTTGGTGGAAAGGGTGTTTTGGAAAGAAAAACTCTTTAGAAAGAGAGCTGAAGAGTTTGGACCTACAAACAGGTATATTTACCTTAAAACAAATCAAAGCAGCAACAAATAACTTCGATATTTCCAATAAGATTGGAGAAGGAGGATTTGGTCCTGTGTATAAGGGTTGTTTACCCAATGGGACATTGATAGCAGTCAAGCAACTTTCTTCGAAATCAAAGCAAGGGAATCGTGAGTTTTTAAATGAAATAAGCATGATTTCTGCTTTACAACACCCTTATCTTGTTAAACTATATGGTTGTTGTGTGGAGGGAGATCAGTTGTTGCTGATTTATGAATACTTGGAAAACAATAGTCTTGCTCGTGCTTTATTTGGTCCAGAGGAACACCAAATAATATTAGATTGGTCAACAAGGAAGAAGATCTGTGTTGGTATTGCTAGAGGTTTGGCATTCCTTCACGAAGAATCAAGACTCAAGGTTGTTCACAGGGACATCAAGGCCACAAACGTGTTACTTGATACCAAACTTGACCCAAAGATATCTGATTTTGGTTTGGCCAAGCTGGATGAGGAGGATAATACTCACATTAGCACTAGAATTGCTGGGACCTATGGATATATGGCTCCTGAGTATGCCATGCATGGTTATTTGACGGACAAAGCAGATGTTTATAGTTTTGGTGTTGTTGCTCTAGAAATCGTTAGTGGTAAGAGCAACACCCTTTATCGATCAAAGGAGGAAGCATTCTATCTTCTTGATTGGGCACATTTGTTGAAAGAGAGAGGCGACATAATGGAGCTAGTTGATAAAAGATTAGGTTCAAATTTCAGAAAAAAGGAAGTTACGGCGATGATCAACGTTGCTCTCTTATGCACCAATGCCACTTCAAACCTTAGGCCCTCTATGTCTTCGGTAGTAAGTATGCTTGAAGGAAAGACCATGGTTCCAGAATTTGTTTCAGAATCAAGCGAAGTAATGGATGAAAATAAGGCGGAAGTAATGAGGCAACATTACTATCAGATGGAAGAAAACACGACAAATAAGTCACAAACACAAAGTCAGAGTTTATTAAAGGATGGACCATGGACTGCTTCATCTTCGTCAGCCGCAGACCTTTATCCTATCCACAATGATTCTTCCTATTGGGAGGACAGAAATTAA 3042 0.3909 MSTSSQFLFLSITVIWFISLTTFAATTIHPVEKKALEDIAKSLGKKGWNFNIDPCSNKSNWVTPPIPNIKSNNSEVTNEVTCNCSVAGDNFCHVVNISLSGQSLPGTLPPELNKLRYLQIIELSRNYLTGTIPKEWGTMTNLVKISLHGNRLTGSIPAEIAKISTLQILEVWINQMSGNLPPELGNLTQIRTLRVSSNNFTGELPVTLANLTTLQDFQIDDNEFSGKIPDYIQNWRSINKLMIQGSGLSGPIPSGISLLTNLTDLRISDLNGSEYAPLPQLNNMALLKILVLRNCNINGTLPKYLGNMTTLKYLDLSFNKVSGTVPTTYASADTKLTYIFLTGNLLTGQVPPWEKKNVNADLSYNNFSIIQGSQVCHDEKVNLFSTSWAHNDIGTDSCLRECPKPSYTLHINCGGNKARVNNTSYDVDLELSGSARFLASHTGKWASSTTGAFIDSDQQADSYIRKNTSTLTMVDAELYMTARVSPISLTYFAFCLENGRYTVDLHFAEIMFINDQTYGSLGRRLFDIYLQGKLVQKDFNIEEEAGGVGKKVVKRFKKVIVTNNTLEIRLYWAGKGREALPDKSVYGPLISAISAKSDSAPRSMSAGTVAGLVVAATIVIILLFGILWWKGCFGKKNSLERELKSLDLQTGIFTLKQIKAATNNFDISNKIGEGGFGPVYKGCLPNGTLIAVKQLSSKSKQGNREFLNEISMISALQHPYLVKLYGCCVEGDQLLLIYEYLENNSLARALFGPEEHQIILDWSTRKKICVGIARGLAFLHEESRLKVVHRDIKATNVLLDTKLDPKISDFGLAKLDEEDNTHISTRIAGTYGYMAPEYAMHGYLTDKADVYSFGVVALEIVSGKSNTLYRSKEEAFYLLDWAHLLKERGDIMELVDKRLGSNFRKKEVTAMINVALLCTNATSNLRPSMSSVVSMLEGKTMVPEFVSESSEVMDENKAEVMRQHYYQMEENTTNKSQTQSQSLLKDGPWTASSSSAADLYPIHNDSSYWEDRN 1013
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g02643 1013 Gene3D Ribonuclease Inhibitor 171 395 IPR032675 -
Trre11g02643 1013 SUPERFAMILY L domain-like 80 351 - -
Trre11g02643 1013 Pfam Malectin domain 408 593 IPR021720 -
Trre11g02643 1013 MobiDBLite consensus disorder prediction 970 1013 - -
Trre11g02643 1013 ProSitePatterns Serine/Threonine protein kinases active-site signature. 787 799 IPR008271 GO:0004672|GO:0006468
Trre11g02643 1013 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 17 975 - -
Trre11g02643 1013 Pfam Protein kinase domain 667 933 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre11g02643 1013 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 406 598 - -
Trre11g02643 1013 FunFam Probable LRR receptor-like serine/threonine-protein kinase RFK1 34 204 - -
Trre11g02643 1013 FunFam Putative LRR receptor-like serine/threonine-protein kinase 741 948 - -
Trre11g02643 1013 SMART serkin_6 665 936 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre11g02643 1013 Gene3D Ribonuclease Inhibitor 32 167 IPR032675 -
Trre11g02643 1013 CDD STKc_IRAK 671 938 - -
Trre11g02643 1013 Gene3D Transferase(Phosphotransferase) domain 1 741 953 - -
Trre11g02643 1013 SUPERFAMILY Protein kinase-like (PK-like) 648 948 IPR011009 -
Trre11g02643 1013 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 634 740 - -
Trre11g02643 1013 Gene3D Phosphorylase Kinase; domain 1 633 740 - -
Trre11g02643 1013 MobiDBLite consensus disorder prediction 970 1001 - -
Trre11g02643 1013 ProSiteProfiles Protein kinase domain profile. 665 946 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre11g02643 1013 FunFam Putative LRR receptor-like serine/threonine-protein kinase isoform A 205 271 - -
Trre11g02643 1013 Gene3D - 405 597 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g02643 Trre-Chr11 33131697 33139805 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g02643 20 980 Receptor kinase-like Gene Family AT1G53420 53.272 0.0 973
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre11g02643 Pkinase 9.1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g02643 - - gmx:732563 1266.91