Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g02628 ATGATGCATGCATCCAATATCAATATCCAAAACTATCAGCAGCTGCAAGAGGATCAGGATACTAAACAATTACTGCTACATTTCAACAACAATAACAGCCAAACCCTACCTCCAAGGCCAACTGCTGGAGGAGCCCGGAACAACAATAATTCATCATCATCATCATCATCATCATCAGGACTATTGGAAACAGGTGCTTTCAGAGTGAAGGCGACTTTCGCGGATGAAAAGATTTTTTTTAGTTTGCAAGTAATGTGCGGTTTCAGAGATTTGCAGCTTGAAATTGCAAGGCGTTTCAACCTAAATGATATGAACAACTTGGTTCTAAAGTATTTGGATGATGAAGGAAAATGTGGGTTGTATTATCATGTGATGCTGATCTTGAAGAATGTAAAGACTTGCACACATCTTCTCACACACGTACCATTAGACTGTCACTATTTCAAGCTTCACCTCTCAATCTACCAAACAACTTCCGCAACAGCAGCAGTCCATCCTCCTAGCTAG 507 0.4043 MMHASNINIQNYQQLQEDQDTKQLLLHFNNNNSQTLPPRPTAGGARNNNNSSSSSSSSSGLLETGAFRVKATFADEKIFFSLQVMCGFRDLQLEIARRFNLNDMNNLVLKYLDDEGKCGLYYHVMLILKNVKTCTHLLTHVPLDCHYFKLHLSIYQTTSATAAVHPPS 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g02628 168 PANTHER PROTEIN NLP8 34 117 IPR045012 GO:0003700
Trre11g02628 168 SUPERFAMILY CAD & PB1 domains 65 117 - -
Trre11g02628 168 Gene3D - 65 120 - -
Trre11g02628 168 MobiDBLite consensus disorder prediction 30 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g02628 Trre-Chr11 32950862 32951368 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g02628 48 115 NLP Transcription Factor Family AT2G17150 47.059 4.37e-13 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g02628 - - tpra:123881749 184.882