Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g02617 ATGACCCCTTCATCTCAATTTCTCTTCCTTTCATTCATTGCCATTTGGTTCATTTCTCTAATAGCTATTGGAGCTACTACTATTCACCCGGACGAAAAGAAAGCTCTCAAAGATATAGCTAAATCACTGGGTAAGAAGGACTGGAACTTTGACATAGATCCATGCAGCAACAAACCTAACTGGGCTACACCTCCTGTACCTCAAGTCTCAGATAGCAATGTCACCTGTGACTGCTCTGTTGCTGGCGACAACTTCTGCCATGTTATTTCAATAAGTTTAATAGCGCAAAATCTCACCGGCATTCTCCCACCAGAACTAACCAGGTTGCGTTACCTTCAAATTATTGACCTCGCTCTCAATTATTTGAACGGTTCAATTCCTAAAGAGTGGGGCTCCATGATGTATATTACTAAAATTTCTCTCGTTGGAAATCGATTAACGGGTTCAATCCCAGTGGAGATTGCAAACATATCTACTCTACAAATTTTGGAGTTATGGATCAATCAAATGTCCGGAAATATTCCTCCCGAGCTTGGGAGTCTAAGCCAACTTCAAATATTGCGACTTACCTCTAACAATTTTACTGGAGAACTACCCATGACATTGGCCAAACTCACTAATTTGCAAGATTTCCGAATTGAGGGAAACCAATTCTCTGGAAAGATACCTGATTATATTCAGAACTGGACAAGTATCCAAAATGTAATGATTCAAGGAAGCGGATTAAGTGGGCCTATTCCTTCTGGAATTTCACTTTTGAGAAACTTAACTGACTTGAGAATTAGTGATTTGGATGGATCTGAAGATGCACCTTTGCCACAACTTAATAAAATGACATCGTTACGAACTCTAATTCTAAGGAACTGCAACATCAGTGGAAAACTGCCTGATTATCTTGGGACTATGACATCATTAAAAACATTAGACCTCAGCTTTAACAAATTAAGTGGAACAATTCCGAGTACCTATGCTGCCATGAAGAGTTCGAATTACATATTTTTAACTGGAAACCTTCTCACTGGCCCCATGCTGCCTTGGAGAACTTACGTTGCCGTAGATCTTTCATACAATAACTTCAGCATCAGCCAAGGGAGTCAAGTATGTTATGATGAAAAAGTGAACTTGTTTTCTACCACATGGGGACGAAATGACATAGCAACAAATTCGTGTTTGAGCTTTGAATGTCCCAAACCTTCATATTCCCTTTATATAAATTGTGGGGGAAAGCAAGCAATAGTCAACAGAAAAAGTTATTATCGTGATTCAGATTTACCTGGACCAGCTAGATTCCATCACAGTCCACAAGGAAATTGGGCATTTAGCACCACTGGTGTATTTATGGAAAGTATGCGAGAAACTTATTCCCCACAAAATATCACCAAACTTACTATGGTGGATGCTGAATTGTACATGAATGCACGTGTTTCTCCTATTTCTTTGACTTATTATGGGTTTTGCCTGGCAAACGGAAGCTACACAGTTAAACTACATTTTGCTGAAATAATGTTCACAGAAGATCAAACTTTTCGTAGTCTTGGAAGGCGTGTATTCGATATCTACCTACAGGGAAAGAGGGTGCAAAAGGACTTCAATATTGCAGAAGAAGCAGGAGGAGTTGGAAAGAAGGTCATAAAACAGTTCAATGATGTTGTTGTTACTAGTAATACTTTGGAGATCCGCTTATATTGGGCTGGAAAAGGGACAATGGCTATCCCAAGTAAATCAGCTTATGGTCCTCTTATATCAGCTATATCAGTGGAATCTGATTCTCCACCTGGAAGCATATCTGCAGGAGCCGTGGTTGGAATTGTGGTTGCAGCAATAACTATTATCATTCTAGTATTTGGTATACTTTGGTGGAAAGGATGTTTTGGAAAGAAAAACTCATTAGAAAGAGACCTGAAGAGTTTAGACATACAAACGGGTTTATTTACCTTGAGACAAATCAAAGCAGCAACAAACAACTTTCATATTTCCAATAAGATTGGAGAAGGAGGGTTTGGTCCTGTGTACAAGGGATGTTTATCGAATGGGACCTTGATAGCAGTCAAACAACTTTCTTCTAAATCAAGGCAAGGGAGTCGTGAGTTTTTAAATGAGATAGGCATGATTTCTGCTTTGCAACACCCTTATCTTGTTAAACTCCATGGTTGTTGTGTGGAAAGAGATCAGTTGTTGCTGATATATGAATACTTGGAAAACAATAGTCTAGCTCGAGCTTTATTTGGTCCAGAGGAACATCAAATAAAATTAGATTGGTCTACAAGGCAGAAGATTTGTGTTGGCATTGCTAGAGGTTTGACATACCTCCATGAAGAATCAAGACTGAAGGTTGTTCATCGGGACATCAAGGCCACAAATGTGTTGCTTGATACGGACCTAGGTCCAAAGATTTCTGATTTTGGTTTGGCCAAGCTTGATGAGGAGGACAAGACTCACATTAGCACTAAAATTGCTGGGACCTATGGATATATGGCTCCTGAATATGCAATGCATGGTTATTTGACAGACAAAGCAGATGTTTATAGTTTTGGAATTGTTGCCTTGGAAATCGTTAGTGGAAGGAGCAACACTCTTTATCCGTCCAAGGAGGAAGCATTCTATCTTCTTGATTGGGCACATATGTTGAAAGAGAAAGGTGACCTAATGGAACTAATTGACAGAAGATTAGGTTCAGATTTCAATAAAAAGGAAGCTATGGTGATGATCGATGTGGCTCTCCTATGCACCAATGTCACTTCAAACCTTAGGCCCTCTATGTCGTCAGTAGTAAGTATGCTTGAAGGAACGACAGTGGTTCCAGAATTTGTTTCGGATTCAAGTGAAGTAATGGATGAAAAGAAGTTGGAAATAATGAGGCAATATTACTATCAGATGGAAGGAAATAAGACAAGTAACTCACATACACAAAGTCAGAGTTTATTAAGTGATGGGGCATGGACTGCTACATCTTCATCAGGTGTAGACCTTTATCCTGTCCAAAGTGATTCTTCCTATTGGGAGAAAAGAAATTAA 3015 0.393 MTPSSQFLFLSFIAIWFISLIAIGATTIHPDEKKALKDIAKSLGKKDWNFDIDPCSNKPNWATPPVPQVSDSNVTCDCSVAGDNFCHVISISLIAQNLTGILPPELTRLRYLQIIDLALNYLNGSIPKEWGSMMYITKISLVGNRLTGSIPVEIANISTLQILELWINQMSGNIPPELGSLSQLQILRLTSNNFTGELPMTLAKLTNLQDFRIEGNQFSGKIPDYIQNWTSIQNVMIQGSGLSGPIPSGISLLRNLTDLRISDLDGSEDAPLPQLNKMTSLRTLILRNCNISGKLPDYLGTMTSLKTLDLSFNKLSGTIPSTYAAMKSSNYIFLTGNLLTGPMLPWRTYVAVDLSYNNFSISQGSQVCYDEKVNLFSTTWGRNDIATNSCLSFECPKPSYSLYINCGGKQAIVNRKSYYRDSDLPGPARFHHSPQGNWAFSTTGVFMESMRETYSPQNITKLTMVDAELYMNARVSPISLTYYGFCLANGSYTVKLHFAEIMFTEDQTFRSLGRRVFDIYLQGKRVQKDFNIAEEAGGVGKKVIKQFNDVVVTSNTLEIRLYWAGKGTMAIPSKSAYGPLISAISVESDSPPGSISAGAVVGIVVAAITIIILVFGILWWKGCFGKKNSLERDLKSLDIQTGLFTLRQIKAATNNFHISNKIGEGGFGPVYKGCLSNGTLIAVKQLSSKSRQGSREFLNEIGMISALQHPYLVKLHGCCVERDQLLLIYEYLENNSLARALFGPEEHQIKLDWSTRQKICVGIARGLTYLHEESRLKVVHRDIKATNVLLDTDLGPKISDFGLAKLDEEDKTHISTKIAGTYGYMAPEYAMHGYLTDKADVYSFGIVALEIVSGRSNTLYPSKEEAFYLLDWAHMLKEKGDLMELIDRRLGSDFNKKEAMVMIDVALLCTNVTSNLRPSMSSVVSMLEGTTVVPEFVSDSSEVMDEKKLEIMRQYYYQMEGNKTSNSHTQSQSLLSDGAWTATSSSGVDLYPVQSDSSYWEKRN 1004
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g02617 1004 Gene3D Ribonuclease Inhibitor 31 198 IPR032675 -
Trre11g02617 1004 Gene3D Ribonuclease Inhibitor 268 380 IPR032675 -
Trre11g02617 1004 FunFam Probable LRR receptor-like serine/threonine-protein kinase RFK1 34 198 - -
Trre11g02617 1004 SMART serkin_6 656 927 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre11g02617 1004 Gene3D Transferase(Phosphotransferase) domain 1 732 946 - -
Trre11g02617 1004 FunFam Putative LRR receptor-like serine/threonine-protein kinase isoform A 199 265 - -
Trre11g02617 1004 Pfam Leucine Rich repeats (2 copies) 279 316 IPR025875 -
Trre11g02617 1004 SUPERFAMILY L domain-like 69 341 - -
Trre11g02617 1004 CDD STKc_IRAK 662 929 - -
Trre11g02617 1004 Gene3D Ribonuclease Inhibitor 199 267 IPR032675 -
Trre11g02617 1004 Pfam Protein tyrosine and serine/threonine kinase 657 927 IPR001245 GO:0004672|GO:0006468
Trre11g02617 1004 SUPERFAMILY Protein kinase-like (PK-like) 639 940 IPR011009 -
Trre11g02617 1004 Gene3D - 399 589 - -
Trre11g02617 1004 Pfam Malectin domain 401 584 IPR021720 -
Trre11g02617 1004 Gene3D Phosphorylase Kinase; domain 1 625 731 - -
Trre11g02617 1004 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 399 589 - -
Trre11g02617 1004 FunFam Putative LRR receptor-like serine/threonine-protein kinase 732 939 - -
Trre11g02617 1004 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 625 731 - -
Trre11g02617 1004 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 14 964 - -
Trre11g02617 1004 ProSitePatterns Serine/Threonine protein kinases active-site signature. 778 790 IPR008271 GO:0004672|GO:0006468
Trre11g02617 1004 ProSiteProfiles Protein kinase domain profile. 656 937 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g02617 Trre-Chr11 32856654 32864951 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g02617 25 979 Receptor kinase-like Gene Family AT1G53420 53.038 0.0 969
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre11g02617 PK_Tyr_Ser-Thr 8.5e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g02617 - - gmx:732563 1288.09