Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g02616 ATGACCCCTTCATCTCAATTTCTCTTCCTTTCATTCATTGCCATTTGGTTCATTTCTCTAATAGCTATTGGAGCTACTACTATTCACCCGGACGAAAAGAAAGCTCTCAAAGATATAGCTAAATCACTGGGTAAGAAGGACTGGAACTTTGACATAGATCCATGCAGCAACAAACCTAACTGGGCTACACCTCCTGTACCTCAAGTCTCAGATAGCAATGTCACCTGTGACTGCTCTGTTGCTGGCGACAACTTCTGCCATGTTATTTCAATAAGTTTAATAGCGCAAAATCTCACCGGCATTCTCCCACCAGAACTAACCAGGTTGCGTTACCTTCAAATTATTGACCTCGCTCTCAATTATTTGAACGGTTCAATTCCTAAAGAGTGGGGCTCCATGATGTATATTACTAAAATTTCTCTCGTTGGAAATCGATTAACGGGTTCAATCCCAGTGGAGATTGCAAACATATCTACTCTACAAATTTTGGAGTTATGGATCAATCAAATGTCCGGAAATATTCCTCCCGAGCTTGGGAGTCTAAGCCAACTTCAAATATTGCGACTTACCTCTAACAATTTTACTGGAGAACTACCCATGACATTGGCCAAACTCACTAATTTGCAAGATTTCCGAATTGAGGGAAACCAATTCTCTGGAAAGATACCTGATTATATTCAGAACTGGACAAGTATCCAAAATGTAATGATTCAAGGAAGCGGATTAAGTGGGCCTATTCCTTCTGGAATTTCACTTTTGAGAAACTTAACTGACTTGAGAATTAGTGATTTGGATGGATCTGAAGATGCACCTTTGCCACAACTTAATAAAATGACATCGTTACGAACTCTAATTCTAAGGAACTGCAACATCAGTGGAAAACTGCCTGATTATCTTGGGACTATGACATCATTAAAAACATTAGACCTCAGCTTTAACAAATTAAGTGGAACAATTCCGAGTACCTATGCTGCCATGAAGAGTTCGAATTACATATTTTTAACTGGAAACCTTCTCACTGGCCCCATGCTGCCTTGGAGAACTTACGTTGCCGTAGATCTTTCATACAATAACTTCAGCATCAGCCAAGGGAGTCAAGTATGTTATGATGAAAAAGTGAACTTGTTTTCTACCACATGGGGACGAAATGACATAGCAACAAATTCGTGTTTGAGCTTTGAATGTCCCAAACGTGAGTTTCTTCCTTCTTCATATTCCCTTTATATAAATTGTGGGGGAAAGCAAGCAATAGTCAACAGAAAAAGTTATTATCGTGATTCAGATTTACCTGGACCAGCTAGATTCCATCACAGTCCACAAGGAAATTGGGCATTTAGCACCACTGGTGTATTTATGGAAAGTATGCGAGAAACTTATTCCCCACAAAATATCACCAAACTTACTATGGTGGATGCTGAATTGTACATGAATGCACGTGTTTCTCCTATTTCTTTGACTTATTATGGGTTTTGCCTGGCAAACGGAAGCTACACAGTTAAACTACATTTTGCTGAAATAATGTTCACAGAAGATCAAACTTTTCGTAGTCTTGGAAGGCGTGTATTCGATATCTACCTACAGGGAAAGAGGGTGCAAAAGGACTTCAATATTGCAGAAGAAGCAGGAGGAGTTGGAAAGAAGGTCATAAAACAGTTCAATGATGTTGTTGTTACTAGTAATACTTTGGAGATCCGCTTATATTGGGCTGGAAAAGGGACAATGGCTATCCCAAGTAAATCAGCTTATGGTCCTCTTATATCAGCTATATCAGTGGAATCTGATTCTCCACCTGGAAGCATATCTGCAGGAGCCGTGGTTGGAATTGTGGTTGCAGCAATAACTATTATCATTCTAGTATTTGGTATACTTTGGTGGAAAGGATGTTTTGGAAAGAAAAACTCATTAGAAAGAGACCTGAAGAGTTTAGACATACAAACGGGTTTATTTACCTTGAGACAAATCAAAGCAGCAACAAACAACTTTCATATTTCCAATAAGATTGGAGAAGGAGGGTTTGGTCCTGTGTACAAGGGATGTTTATCGAATGGGACCTTGATAGCAGTCAAACAACTTTCTTCTAAATCAAGGCAAGGGAGTCGTGAGTTTTTAAATGAGATAGGCATGATTTCTGCTTTGCAACACCCTTATCTTGTTAAACTCCATGGTTGTTGTGTGGAAAGAGATCAGTTGTTGCTGATATATGAATACTTGGAAAACAATAGTCTAGCTCGAGCTTTATTTGGTCCAGAGGAACATCAAATAAAATTAGATTGGTCTACAAGGCAGAAGATTTGTGTTGGCATTGCTAGAGGTTTGACATACCTCCATGAAGAATCAAGACTGAAGGTTGTTCATCGGGACATCAAGGCCACAAATGTGTTGCTTGATACGGACCTAGGTCCAAAGATTTCTGATTTTGGTTTGGCCAAGCTTGATGAGGAGGACAAGACTCACATTAGCACTAAAATTGCTGGGACCTATGGATATATGGCTCCTGAATATGCAATGCATGGTTATTTGACAGACAAAGCAGATGTTTATAGTTTTGGAATTGTTGCCTTGGAAATCGTTAGTGGAAGGAGCAACACTCTTTATCCGTCCAAGGAGGAAGCATTCTATCTTCTTGATTGGGCACATATGTTGAAAGAGAAAGGTGACCTAATGGAACTAATTGACAGAAGATTAGGTTCAGATTTCAATAAAAAGGAAGCTATGGTGATGATCGATGTGGCTCTCCTATGCACCAATGTCACTTCAAACCTTAGGCCCTCTATGTCGTCAGTAGTAAGTATGCTTGAAGGAACGACAGTGGTTCCAGAATTTGTTTCGGATTCAAGTGAAGTAATGGATGAAAAGAAGTTGGAAATAATGAGGCAATATTACTATCAGATGGAAGGAAATAAGACAAGTAACTCACATACACAAAGTCAGAGTTTATTAAGTGATGGGGCATGGACTGCTACATCTTCATCAGGTGTAGACCTTTATCCTGTCCAAAGTGATTCTTCCTATTGGGAGAAAAGAAATTAA 3030 0.3931 MTPSSQFLFLSFIAIWFISLIAIGATTIHPDEKKALKDIAKSLGKKDWNFDIDPCSNKPNWATPPVPQVSDSNVTCDCSVAGDNFCHVISISLIAQNLTGILPPELTRLRYLQIIDLALNYLNGSIPKEWGSMMYITKISLVGNRLTGSIPVEIANISTLQILELWINQMSGNIPPELGSLSQLQILRLTSNNFTGELPMTLAKLTNLQDFRIEGNQFSGKIPDYIQNWTSIQNVMIQGSGLSGPIPSGISLLRNLTDLRISDLDGSEDAPLPQLNKMTSLRTLILRNCNISGKLPDYLGTMTSLKTLDLSFNKLSGTIPSTYAAMKSSNYIFLTGNLLTGPMLPWRTYVAVDLSYNNFSISQGSQVCYDEKVNLFSTTWGRNDIATNSCLSFECPKREFLPSSYSLYINCGGKQAIVNRKSYYRDSDLPGPARFHHSPQGNWAFSTTGVFMESMRETYSPQNITKLTMVDAELYMNARVSPISLTYYGFCLANGSYTVKLHFAEIMFTEDQTFRSLGRRVFDIYLQGKRVQKDFNIAEEAGGVGKKVIKQFNDVVVTSNTLEIRLYWAGKGTMAIPSKSAYGPLISAISVESDSPPGSISAGAVVGIVVAAITIIILVFGILWWKGCFGKKNSLERDLKSLDIQTGLFTLRQIKAATNNFHISNKIGEGGFGPVYKGCLSNGTLIAVKQLSSKSRQGSREFLNEIGMISALQHPYLVKLHGCCVERDQLLLIYEYLENNSLARALFGPEEHQIKLDWSTRQKICVGIARGLTYLHEESRLKVVHRDIKATNVLLDTDLGPKISDFGLAKLDEEDKTHISTKIAGTYGYMAPEYAMHGYLTDKADVYSFGIVALEIVSGRSNTLYPSKEEAFYLLDWAHMLKEKGDLMELIDRRLGSDFNKKEAMVMIDVALLCTNVTSNLRPSMSSVVSMLEGTTVVPEFVSDSSEVMDEKKLEIMRQYYYQMEGNKTSNSHTQSQSLLSDGAWTATSSSGVDLYPVQSDSSYWEKRN 1009
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g02616 1009 Pfam Malectin domain 406 589 IPR021720 -
Trre11g02616 1009 Gene3D Ribonuclease Inhibitor 31 198 IPR032675 -
Trre11g02616 1009 FunFam Probable LRR receptor-like serine/threonine-protein kinase RFK1 34 198 - -
Trre11g02616 1009 Gene3D Phosphorylase Kinase; domain 1 630 736 - -
Trre11g02616 1009 Gene3D Ribonuclease Inhibitor 199 267 IPR032675 -
Trre11g02616 1009 Pfam Protein tyrosine and serine/threonine kinase 662 932 IPR001245 GO:0004672|GO:0006468
Trre11g02616 1009 Pfam Leucine Rich repeats (2 copies) 279 316 IPR025875 -
Trre11g02616 1009 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 14 969 - -
Trre11g02616 1009 SUPERFAMILY L domain-like 70 341 - -
Trre11g02616 1009 SMART serkin_6 661 932 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre11g02616 1009 FunFam Putative LRR receptor-like serine/threonine-protein kinase 737 944 - -
Trre11g02616 1009 Gene3D Ribonuclease Inhibitor 268 380 IPR032675 -
Trre11g02616 1009 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 630 736 - -
Trre11g02616 1009 ProSitePatterns Serine/Threonine protein kinases active-site signature. 783 795 IPR008271 GO:0004672|GO:0006468
Trre11g02616 1009 Gene3D - 403 594 - -
Trre11g02616 1009 FunFam Putative LRR receptor-like serine/threonine-protein kinase isoform A 199 265 - -
Trre11g02616 1009 ProSiteProfiles Protein kinase domain profile. 661 942 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre11g02616 1009 SUPERFAMILY Protein kinase-like (PK-like) 644 945 IPR011009 -
Trre11g02616 1009 CDD STKc_IRAK 667 934 - -
Trre11g02616 1009 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 404 594 - -
Trre11g02616 1009 Gene3D Transferase(Phosphotransferase) domain 1 737 951 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g02616 Trre-Chr11 32856654 32864951 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g02616 25 984 Receptor kinase-like Gene Family AT1G53420 52.766 0.0 963
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre11g02616 PK_Tyr_Ser-Thr 8.5e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g02616 - - gmx:732563 1282.7