Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g02610 ATGAAACCTTATGTTGAACCCATTCACATCAAGAACTATGCTGGCAAACGTGTGGGTATTGATGCATATTCATGGCTTCATAAAGGGGCTTATTCATGTAGTATGGAGCTTTGTCTTGATTCTGATAGTGAAAGAAAATTGCGGTATATTGAATACTTTATGCATAGAGTGAACTTGCTTCGGTACTATAAAGTGACACCAGTTGTTGTTTTTGATGGTGGCAATGTTCCTTGCAAAGCAGCAACTGAGAAAGAGAGGAACAAAAAAAGACATGTTTATCGTGAGTTGGCAATGAATAAGCTCAAAGAAGGGAATGTTAATGCTGCTTCTGAGCTCTTTCAGAGAGCAGTGAATATTACTCCTGTTATGGCACATAAACTAATTCAGACTTTGAAATCAGAGAACATTGAGTTTGTTGTAGCTCCATATGAAGCAGATGCTCAGCTAGCATACTTGTCCACCCTTGAAACTGAAAAGGGCGGCATTGCAGCAGTGATCACAGAAGATAGTGATTTGATAGCATATGGTTGTCCAGCTGTTATCTTTAAGATGGATCGTGAGGGGAATGGCGAAAGAATAGAGTTAGAGAAAGTTTTTTCTGCTGTATCTTGTAAACCTTCATTTCGAAATTTCGATATGAAACTATTCACAGGTATGTGTGTTTTAGCTGGCTGTGATTTTCTTCCATCTGTTCCTGGCATTGGTGTTGCTCGAGCTCATGCCCTTGTTTCGAAATATCGAAATATCGACCGTATCTTATCTGTTCTTCAGTTTGAGAAGGGCGATCAAATGCCAGAAGATTACGCCAAATCCTTCAATGATGCACTTGCGGTCTTTCAGCATGCTCGAATATATGATATCAATACCAAAGAACTCAAGCACATGAAGCCTCTTCCGGAAAATTTTCTCGAGTCACTTAACGAAAACCTTGATTTTTTGGGACCAGAAATTCCCTCAACTATAGTCAAATCAATAGCTGAAGGAAACTTGAATCCATCAACTAAGGAAGCCTTTGACGAGTCTGAATGTTCTCAACTTCCTTTACACCCTATTGAACCAAAATCCATTGGTCAACTCAGGAAAAGTGAAGTTCCAGCACCATTTAAACAGGAAAATTGTTTTTCAGTCTTTGGCTCTCAGAACATCAACGAAAATTATACAGTTACAAGGCTCTCAGATAAAGATAAGTATTCAAATGAAGCATCTGCACTTCAGAAACTAATCATGCCATTGAAAACAAATGAAACAACAAAAAAGACTATTACATGTGACAAAACTCCTTTGAAGGTTCCTAACAACAACCCTTTTAGGATAAGAAAACACGAGGAGGAAGAGGTGGAGGTGGAGGAAGAGGAGAAATTAAATTTCTTTCAGAAAGATGAAACAGTTGAAGAAATTTCTATTGTAAACAGTGTTGAATATATTGATCTTGATGATTACATGTCACCAAATAACATTCAAGAAAAAGGGTCTAACAATTTGTCAAGGAAAAGGAAGTTTGAGAATATTTGCTTGGATAAAGTAGAAGCTAGTGATGAACAGGTTTCAGGAGTGACTGAAGTGGAAAATTGTGATGCTTTATGCTTGAATATGGAGTCACAAGAAAGTGTAAAGTCTAAGATTAGGAATAATGATTTGAAAGGAAGTGAAAAGAAATCCAAGATAAGTAACTCCCAGAAAAAGGGGAGTAATATTAGAACTATTTTGAATTTCTTTTCAAGAGTGTAA 1728 0.3709 MKPYVEPIHIKNYAGKRVGIDAYSWLHKGAYSCSMELCLDSDSERKLRYIEYFMHRVNLLRYYKVTPVVVFDGGNVPCKAATEKERNKKRHVYRELAMNKLKEGNVNAASELFQRAVNITPVMAHKLIQTLKSENIEFVVAPYEADAQLAYLSTLETEKGGIAAVITEDSDLIAYGCPAVIFKMDREGNGERIELEKVFSAVSCKPSFRNFDMKLFTGMCVLAGCDFLPSVPGIGVARAHALVSKYRNIDRILSVLQFEKGDQMPEDYAKSFNDALAVFQHARIYDINTKELKHMKPLPENFLESLNENLDFLGPEIPSTIVKSIAEGNLNPSTKEAFDESECSQLPLHPIEPKSIGQLRKSEVPAPFKQENCFSVFGSQNINENYTVTRLSDKDKYSNEASALQKLIMPLKTNETTKKTITCDKTPLKVPNNNPFRIRKHEEEEVEVEEEEKLNFFQKDETVEEISIVNSVEYIDLDDYMSPNNIQEKGSNNLSRKRKFENICLDKVEASDEQVSGVTEVENCDALCLNMESQESVKSKIRNNDLKGSEKKSKISNSQKKGSNIRTILNFFSRV 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g02610 575 ProSiteProfiles TPR repeat profile. 90 123 IPR019734 GO:0005515
Trre11g02610 575 CDD PIN_EXO1 2 199 IPR044752 GO:0046872
Trre11g02610 575 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 216 231 IPR006084 -
Trre11g02610 575 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 67 86 IPR006084 -
Trre11g02610 575 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 15 29 IPR006084 -
Trre11g02610 575 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 131 148 IPR006084 -
Trre11g02610 575 Pfam XPG I-region 135 226 IPR006086 GO:0004518
Trre11g02610 575 SMART xpgineu 132 204 IPR006086 GO:0004518
Trre11g02610 575 FunFam Exonuclease 1, putative 1 205 - -
Trre11g02610 575 CDD H3TH_FEN1-like 216 286 - -
Trre11g02610 575 MobiDBLite consensus disorder prediction 539 557 - -
Trre11g02610 575 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 6 531 IPR006084 -
Trre11g02610 575 SUPERFAMILY PIN domain-like 2 226 IPR029060 -
Trre11g02610 575 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 211 340 IPR036279 -
Trre11g02610 575 MobiDBLite consensus disorder prediction 539 561 - -
Trre11g02610 575 Pfam XPG N-terminal domain 5 91 IPR006085 GO:0004518
Trre11g02610 575 SMART xpgn3 1 93 IPR006085 GO:0004518
Trre11g02610 575 Gene3D - 209 282 - -
Trre11g02610 575 FunFam exonuclease 1 209 282 - -
Trre11g02610 575 ProSitePatterns XPG protein signature 2. 135 149 IPR019974 GO:0016788
Trre11g02610 575 Gene3D - 1 203 - -
Trre11g02610 575 SMART HhH_4 213 246 IPR008918 GO:0003677|GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g02610 Trre-Chr11 32775840 32779745 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g02610 12 309 Core DNA Replication Machinery Family AT5G26680 24.595 2.57e-14 73.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g02610 K10746 - gmx:100817932 812.372