Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g02609 ATGGGCATCAAAGATCTTCTCAGATTCATGAAACCTTATGTTGAACCCATTCACATCAAGAACTATGCTGGCAAACGTGTGGGTATTGATGCATATTCATGGCTTCATAAAGGGGCTTATTCATGTAGTATGGAGCTTTGTCTTGATTCTGATAGTGAAAGAAAATTGCGGTATATTGAATACTTTATGCATAGAGTGAACTTGCTTCGGTACTATAAAGTGACACCAGTTGTTGTTTTTGATGGTGGCAATGTTCCTTGCAAAGCAGCAACTGAGAAAGAGAGGAACAAAAAAAGACATGTTTATCGTGAGTTGGCAATGAATAAGCTCAAAGAAGGGAATGTTAATGCTGCTTCTGAGCTCTTTCAGAGAGCAGTGAATATTACTCCTGTTATGGCACATAAACTAATTCAGACTTTGAAATCAGAGAACATTGAGTTTGTTGTAGCTCCATATGAAGCAGATGCTCAGCTAGCATACTTGTCCACCCTTGAAACTGAAAAGGGCGGCATTGCAGCAGTGATCACAGAAGATAGTGATTTGATAGCATATGGTTGTCCAGCTGTTATCTTTAAGATGGATCGTGAGGGGAATGGCGAAAGAATAGAGTTAGAGAAAGTTTTTTCTGCTGTATCTTGTAAACCTTCATTTCGAAATTTCGATATGAAACTATTCACAGGTATGTGTGTTTTAGCTGGCTGTGATTTTCTTCCATCTGTTCCTGGCATTGGTGTTGCTCGAGCTCATGCCCTTGTTTCGAAATATCGAAATATCGACCGTATCTTATCTGTTCTTCAGTTTGAGAAGGGCGATCAAATGCCAGAAGATTACGCCAAATCCTTCAATGATGCACTTGCGGTCTTTCAGCATGCTCGAATATATGATATCAATACCAAAGAACTCAAGCACATGAAGCCTCTTCCGGAAAATTTTCTCGAGTCACTTAACGAAAACCTTGATTTTTTGGGACCAGAAATTCCCTCAACTATAGTCAAATCAATAGCTGAAGGAAACTTGAATCCATCAACTAAGGAAGCCTTTGACGAGTCTGAATGTTCTCAACTTCCTTTACACCCTATTGAACCAAAATCCATTGGTCAACTCAGGAAAAGTGAAGTTCCAGCACCATTTAAACAGGAAAATTGTTTTTCAGTCTTTGGCTCTCAGAACATCAACGAAAATTATACAGTTACAAGGCTCTCAGATAAAGATAAGTATTCAAATGAAGCATCTGCACTTCAGAAACTAATCATGCCATTGAAAACAAATGAAACAACAAAAAAGACTATTACATGTGACAAAACTCCTTTGAAGGTTCCTAACAACAACCCTTTTAGGATAAGAAAACACGAGGAGGAAGAGGTGGAGGTGGAGGAAGAGGAGAAATTAAATTTCTTTCAGAAAGATGAAACAGTTGAAGAAATTTCTATTGTAAACAGTGTTGAATATATTGATCTTGATGATTACATGTCACCAAATAACATTCAAGAAAAAGGGTCTAACAATTTGTCAAGGAAAAGGAAGTTTGAGAATATTTGCTTGGATAAAGTAGAAGCTAGTGATGAACAGGTTTCAGGAGTGACTGAAGTGGAAAATTGTGATGCTTTATGCTTGAATATGGAGTCACAAGAAAGTGTAAAGTCTAAGATTAGGAATAATGATTTGAAAGGAAGTGAAAAGAAATCCAAGATAAGTAACTCCCAGAAAAAGGGGAGTAATATTAGAACTATTTTGAATTTCTTTTCAAGAGTGTAA 1755 0.3715 MGIKDLLRFMKPYVEPIHIKNYAGKRVGIDAYSWLHKGAYSCSMELCLDSDSERKLRYIEYFMHRVNLLRYYKVTPVVVFDGGNVPCKAATEKERNKKRHVYRELAMNKLKEGNVNAASELFQRAVNITPVMAHKLIQTLKSENIEFVVAPYEADAQLAYLSTLETEKGGIAAVITEDSDLIAYGCPAVIFKMDREGNGERIELEKVFSAVSCKPSFRNFDMKLFTGMCVLAGCDFLPSVPGIGVARAHALVSKYRNIDRILSVLQFEKGDQMPEDYAKSFNDALAVFQHARIYDINTKELKHMKPLPENFLESLNENLDFLGPEIPSTIVKSIAEGNLNPSTKEAFDESECSQLPLHPIEPKSIGQLRKSEVPAPFKQENCFSVFGSQNINENYTVTRLSDKDKYSNEASALQKLIMPLKTNETTKKTITCDKTPLKVPNNNPFRIRKHEEEEVEVEEEEKLNFFQKDETVEEISIVNSVEYIDLDDYMSPNNIQEKGSNNLSRKRKFENICLDKVEASDEQVSGVTEVENCDALCLNMESQESVKSKIRNNDLKGSEKKSKISNSQKKGSNIRTILNFFSRV 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g02609 584 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 76 95 IPR006084 -
Trre11g02609 584 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 24 38 IPR006084 -
Trre11g02609 584 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 140 157 IPR006084 -
Trre11g02609 584 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 225 240 IPR006084 -
Trre11g02609 584 Gene3D - 1 212 - -
Trre11g02609 584 ProSiteProfiles TPR repeat profile. 99 132 IPR019734 GO:0005515
Trre11g02609 584 SUPERFAMILY PIN domain-like 2 235 IPR029060 -
Trre11g02609 584 SMART xpgineu 141 213 IPR006086 GO:0004518
Trre11g02609 584 MobiDBLite consensus disorder prediction 548 570 - -
Trre11g02609 584 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 220 349 IPR036279 -
Trre11g02609 584 FunFam exonuclease 1 218 291 - -
Trre11g02609 584 Gene3D - 218 291 - -
Trre11g02609 584 SMART xpgn3 1 102 IPR006085 GO:0004518
Trre11g02609 584 CDD H3TH_FEN1-like 225 295 - -
Trre11g02609 584 ProSitePatterns XPG protein signature 2. 144 158 IPR019974 GO:0016788
Trre11g02609 584 Pfam XPG N-terminal domain 1 100 IPR006085 GO:0004518
Trre11g02609 584 SMART HhH_4 222 255 IPR008918 GO:0003677|GO:0003824
Trre11g02609 584 CDD PIN_EXO1 1 208 IPR044752 GO:0046872
Trre11g02609 584 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 540 IPR006084 -
Trre11g02609 584 Pfam XPG I-region 144 235 IPR006086 GO:0004518
Trre11g02609 584 FunFam Exonuclease 1, putative 1 214 - -
Trre11g02609 584 MobiDBLite consensus disorder prediction 548 566 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g02609 Trre-Chr11 32775813 32779745 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g02609 1 318 Core DNA Replication Machinery Family AT5G26680 24.324 3.78e-15 75.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g02609 K10746 - gmx:100817932 829.706