Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g02561 ATGTCAAGGGAATTTAATTTCATTAAGGATCTCAACAAGGAGAGAGACATCTGGAAAATAGCAGTCAGAGTTATAGACTCCTGGACTGTTACAGGGACTAATGGCTTTCAACATCTTGAGATGGTTATTGTTGATGGGAAGGGTGATCGTACAAAGTTCACCAAATCACCTGAAATCACTAACATTCCTCTTCATGAGTTTTGCTTCAAAAATTACAAAGAAGTTCAAGCTGGAAAGTTCAAAAATAACTTATTATATGAGATCATTGGAGTTATTCATGAAGTTGTCAAAACTCAAAGTGTTGCTTCTGGGAAGAAACCATGTACAAATTTAATCTTAGCTAATGAATGTGGCGACATGGTTGATGTCACTCTGTGGGAAGCATTTTCTATTCAGCTGATGAACTATATCACTACCCGCAAAGACAAAGGTGCAATTGTGTTAATTCTAACACATGCTCAGTGCAAACTAGGAGACAATGGTAGACCAAACTTCTGTAACAACTGGACCGGATCAAAGCTTTTAATCAATTTGGAACATCCAGCTGTAGAAAAGTTTAAGTCATCATTCAACGATATTTCTTCAACGCAAGCTGCTACTCAAGACTTTAGTCAAATATCTTCATCTTCTCAAGTTTCTAACAATGATGTGTTTTCAAATCTAAGTCAGTTCAAGACAATTGCTCAAATGAAACTCTTTCAGAAGGACTCCCACTGCATCACTATTGGAACTACAAAAAAGTTTAATCCTAACCAGTTTGGTTGGTACTATGAAAGTTGTACCAAATGTACTAAATCATCAAGATCTTTGGGTGAAAATTATACATGCTCATGCGGTGAGGAAGTCAAAGTTCCAATTGCTAGGTTCAAAGTTGTTGTTCAAGTTGAATATCAAGGTAGTAAGGCAGATTTTATTTTCTGGGACAATGAATGTCAATCCATTATTGGTGACACTGCTGAAGATATCCGACAAGAGATGAAAAAGGTTGGTGAAGATGATCCTAAAATATATCCAACTCATCTTGACAAACTTCTTAATTTAGAATGTGCATTTAAAGTTAAGTACCAGCCATACTATCGCCAAGCTTCAATCAATAAGCTATCATCTGATTCCACTATCATCGATAATATTAAGATTCACATCACTCCATCTCAGGTCTCCCTTTCTGCTTCAAATGAAGCTAACTTTGAAATTATCTCCAACATTACACCTGCTAAGCGTGTTTCAGCTGACAATGAAATACATCCAGACACTGCATCTCCTCAAATCAACGGAGGTCAACTTTCATCTACAAGGTTACGTACTAAGGCTGCAAAGGGAGGAAAGCATGTCAAAGTTGAATGA 1344 0.3676 MSREFNFIKDLNKERDIWKIAVRVIDSWTVTGTNGFQHLEMVIVDGKGDRTKFTKSPEITNIPLHEFCFKNYKEVQAGKFKNNLLYEIIGVIHEVVKTQSVASGKKPCTNLILANECGDMVDVTLWEAFSIQLMNYITTRKDKGAIVLILTHAQCKLGDNGRPNFCNNWTGSKLLINLEHPAVEKFKSSFNDISSTQAATQDFSQISSSSQVSNNDVFSNLSQFKTIAQMKLFQKDSHCITIGTTKKFNPNQFGWYYESCTKCTKSSRSLGENYTCSCGEEVKVPIARFKVVVQVEYQGSKADFIFWDNECQSIIGDTAEDIRQEMKKVGEDDPKIYPTHLDKLLNLECAFKVKYQPYYRQASINKLSSDSTIIDNIKIHITPSQVSLSASNEANFEIISNITPAKRVSADNEIHPDTASPQINGGQLSSTRLRTKAAKGGKHVKVE 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g02561 447 SUPERFAMILY Nucleic acid-binding proteins 225 356 IPR012340 -
Trre11g02561 447 Gene3D - 203 379 IPR012340 -
Trre11g02561 447 MobiDBLite consensus disorder prediction 415 434 - -
Trre11g02561 447 Gene3D - 60 202 IPR012340 -
Trre11g02561 447 SUPERFAMILY Nucleic acid-binding proteins 72 191 IPR012340 -
Trre11g02561 447 MobiDBLite consensus disorder prediction 412 447 - -
Trre11g02561 447 PANTHER OS03G0429900 PROTEIN 5 436 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g02561 Trre-Chr11 31824783 31827440 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g02561 62 331 Core DNA Replication Machinery Family AT5G61000 22.581 1.03e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g02561 - - tpra:123885385 598.971