Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g02558 ATGCTTTCAAGTGTTTTCAAAGCTGAAGATGAAACACTTTATCCAATGCTGGAAAACACTTACACCTTGCATCCCTTTGAAAATGATCAAATTTTCGGATGGGAACAAAAAATTACTAGGCCATATGCAAGTGACATGAAGAATCAAGTTCTGCACATTCCAAAGAAAGCTGTTGAATATGTAATCAGAGGAAAGAAAGAAATCACCATCAAAACAAGACATAATTTGGATGGCAGCAAGTGGACAATTCATACTTACACCAGACCAAATGGAAGAAAGGATAAGTCGTTTACTAATGGGTGGTATGAATTTAATAAAGCTAACAATCTTCAAGAAGGAGATCTTTTGCAGTTGAAACTATCGGATCCATCACACGTTATGGTTGTCGACATTGTTCGTTGCAATCGATCAATATGA 417 0.3621 MLSSVFKAEDETLYPMLENTYTLHPFENDQIFGWEQKITRPYASDMKNQVLHIPKKAVEYVIRGKKEITIKTRHNLDGSKWTIHTYTRPNGRKDKSFTNGWYEFNKANNLQEGDLLQLKLSDPSHVMVVDIVRCNRSI 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g02558 138 CDD B3_DNA 51 133 IPR003340 GO:0003677
Trre11g02558 138 Gene3D - 34 136 IPR015300 -
Trre11g02558 138 SMART B3_2 38 135 IPR003340 GO:0003677
Trre11g02558 138 SUPERFAMILY DNA-binding pseudobarrel domain 43 128 IPR015300 -
Trre11g02558 138 ProSiteProfiles B3 DNA-binding domain profile. 36 135 IPR003340 GO:0003677
Trre11g02558 138 Pfam B3 DNA binding domain 44 133 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g02558 Trre-Chr11 31770299 31770799 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre11g02558 B3 2.5e-12 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g02558 - - tpra:123886203 137.887