Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g02554 ATGGAGAATCTGGTTTGGATTCCTACAAATAGCAAAAAGGCAATGGAAGAAGAACTATTAAGAGGACGTGACATGGCAAATCAAGTACTTGAAGTACTAAGTTTTGATGATAAGTCAAATATTATTAGAGAAATAAAAGGGTCAAATTTGAAGTCAACATCATCATCAAAAGTGTTACCCTTAAGTGTTGCTGAAGATCTTGTTCGTGAGGTACTCAAATCATTCACAAATACAATTTTGATCTTGAACAACAATCAAGAATCCAATGATGTTGGAGATGTTGCTTTGTCAACAAATTGGCACAAGCTGGAGGAGGAGGATTTAGATAGATCTTGCAAGAAACTCAAGACTCTCAACACCAAAAATCCAAAAGGGTCAAACAAGAGAAAGTCATCAATTCCAGCAACTTGGGAAAAGACCAGCTCAATATTGATTGATGATGGTCACGCATGGAGAAAGTATGGACAAAAGAAGATAACAAATGCTAAATACTTCAGGAGCTACTATAGGTGCACACACATGAATGATCAATATTGCAAAGCAATTAAACATGTTCAAAGAACTCAAGAGAACCCTCCATTGTACCAAACTACATATTATGGACATCACACTTGCCAACGCTCTTTCCATTCCAACTTAAATTTGGAATCCAATTTGTCCTCTAATGACTCTTCTACATTACTTAGTTTTGATAACAATATTCTAAATAAACAAGAATACTCATTTGCACAACCACCATCGCCGCGTCTTGAATCTACAAAAGTGGAACCCAAGGAAGAGATTCAAGAAGATTATTTTGTTCAAAATGAGTTATTCTCACCGCAGAACATGTTATCGTGTGATTTTGAAGTTTATTTTGATTATTTAAGACATGTCACTATGCTATCATCGACTGAATCATTTGAGTTTGAGAATGTTTATGATCAGTTTTGA 933 0.3505 MENLVWIPTNSKKAMEEELLRGRDMANQVLEVLSFDDKSNIIREIKGSNLKSTSSSKVLPLSVAEDLVREVLKSFTNTILILNNNQESNDVGDVALSTNWHKLEEEDLDRSCKKLKTLNTKNPKGSNKRKSSIPATWEKTSSILIDDGHAWRKYGQKKITNAKYFRSYYRCTHMNDQYCKAIKHVQRTQENPPLYQTTYYGHHTCQRSFHSNLNLESNLSSNDSSTLLSFDNNILNKQEYSFAQPPSPRLESTKVEPKEEIQEDYFVQNELFSPQNMLSCDFEVYFDYLRHVTMLSSTESFEFENVYDQF 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g02554 310 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 36 222 IPR044810 GO:0003700
Trre11g02554 310 Pfam WRKY DNA -binding domain 146 206 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre11g02554 310 ProSiteProfiles WRKY domain profile. 140 203 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre11g02554 310 Gene3D WRKY domain 131 208 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre11g02554 310 SMART WRKY_cls 145 207 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre11g02554 310 SUPERFAMILY WRKY DNA-binding domain 141 206 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g02554 Trre-Chr11 31734369 31736221 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g02554 12 206 WRKY Transcription Factor Family AT5G01900 33.000 3.14e-25 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Trre11g02554 WRKY 3e-22 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g02554 - - psat:127081893 333.954