Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g02549 ATGGAGAATCAATATCCTTCAAATTGTAGAAAGGAAATTATGGAACAAGAGCTAATTAGAGGACGTGAGGCAGCAAATGAATTACTTGAAGTAATTGTGAACAAATTCAGTACTAATCCTCATTACCATGGAGATTTAGAAGGGTTAAAAATACCCTTAGCGCAAGATCTTGTTAACAAGGTACTTAGATCATTCACAAATACTCTTTTTCTTTTGAACACTAATAATGATGTCTTCAGTGATGAGGAAGTGTTGCCTATTACTTCTATCAAAGATTTGTCATCACCAGCAAAGTGTCCAAAGCTTGAAGAAACAGATCATGAAGCTTGCAAGAGTTTTAAACTTCAAAGAGGGTGCTACAAAAGAAAGTCAAATGCAGTTACTTGGGAGAAGGATAGCTCAATTTTGATTGAAGATGGCTATGAATGGAGAAAATATGGACAGAAAAAGATAATGAAGGCAAAATATCTCAGGAGCTACTACAGATGCAGCTACAAATGTGAACAAGATTGTGCAGCTATGAAACAAGTACAAAGAATTCAAGAGGAACCTCCATTGTACAGAACCACATATTATGGCCATCATAATTGCAAAACCTCTTTATCAAATTCAGAAATCACATCATTGGAACCTAATAATAATTCATCTATGTTCATTAACTTCAATGATAGCTTCCAAACCAAAGAACAATTCCCTTCATTTTCATCATCATCAGTTTCTAAATCCACAAAACAGGAGCCTATAGATCAAGTTATTAATCCCTATCATAATCACATTGCTCAAAACCAATTAATCTCATCAGATTATTACCCTCTCTCATGTGATTATGAACCTGAATTTGATTATTTTAGGCATGCTACTATGCTATCATCCCCTCAATCTGTTGAATTTGATTCCAAAGCATTTTTTGGTCTATAA 918 0.341 MENQYPSNCRKEIMEQELIRGREAANELLEVIVNKFSTNPHYHGDLEGLKIPLAQDLVNKVLRSFTNTLFLLNTNNDVFSDEEVLPITSIKDLSSPAKCPKLEETDHEACKSFKLQRGCYKRKSNAVTWEKDSSILIEDGYEWRKYGQKKIMKAKYLRSYYRCSYKCEQDCAAMKQVQRIQEEPPLYRTTYYGHHNCKTSLSNSEITSLEPNNNSSMFINFNDSFQTKEQFPSFSSSSVSKSTKQEPIDQVINPYHNHIAQNQLISSDYYPLSCDYEPEFDYFRHATMLSSPQSVEFDSKAFFGL 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g02549 305 Pfam WRKY DNA -binding domain 138 198 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre11g02549 305 ProSiteProfiles WRKY domain profile. 132 200 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre11g02549 305 SUPERFAMILY WRKY DNA-binding domain 134 198 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre11g02549 305 Gene3D WRKY domain 120 200 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre11g02549 305 SMART WRKY_cls 137 199 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre11g02549 305 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 15 219 IPR044810 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g02549 Trre-Chr11 31628571 31638957 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g02549 55 298 WRKY Transcription Factor Family AT3G56400 33.200 4.48e-30 113
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Trre11g02549 WRKY 4.4e-22 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g02549 - - gmx:102663141 297.36