Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g02519 ATGATGAAGAGGAACAATATGAGCACAAGTTTGAAAGGCTATCATCACCATAGTTATTACAACAACAATCCATTAATCATCACAAACAAAAGTCCTTCTGATCATAGTAATAATGGATCATCATCAGAGGATTATATGAATGGATTTCATCCATGGCCACCAAGATCATACACATGTAGCTTTTGTAGAAAAGAGTTCAAATCAGCTCAAGCACTTGGTGGTCACATGAATGTTCATAGGAGAGATAGAGCAAGGCTTAGACAATCATCACCACCAACTCATCAAGGTTCTTCTATGCTTAACCTTAATAACCCTACTAACCCTAACTTTTTCTCAAACTCATCTTCATCATCATCATTAATATCATCATCTTCCTCTTTAGCACCAACAAATCTCAAGCCTATTACTTGCACTTTACCTTTGTTTGTTGTGGATGGTATTTTGTTGAACCCTAGTTTGAGCACAATGACCAAAGAGCCCATAAGAAAATCAAATATGGAACAATATGATGATTTAGCTTGTGAAGATGGATGTAGAATGATGAAGAAGGGTGAGATTCTAAGGATGGATTTGGAGATAGGTTTACCAGGAGATTATGATGATAATAACTTGGATCTTGAGCTTCGTTTGGGTACTACTACTTACTCTAATTAA 654 0.3593 MMKRNNMSTSLKGYHHHSYYNNNPLIITNKSPSDHSNNGSSSEDYMNGFHPWPPRSYTCSFCRKEFKSAQALGGHMNVHRRDRARLRQSSPPTHQGSSMLNLNNPTNPNFFSNSSSSSSLISSSSSLAPTNLKPITCTLPLFVVDGILLNPSLSTMTKEPIRKSNMEQYDDLACEDGCRMMKKGEILRMDLEIGLPGDYDDNNLDLELRLGTTTYSN 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g02519 217 MobiDBLite consensus disorder prediction 89 115 - -
Trre11g02519 217 PANTHER OS07G0101800 PROTEIN 40 213 - -
Trre11g02519 217 Pfam C2H2-type zinc finger 57 81 - -
Trre11g02519 217 ProSitePatterns Zinc finger C2H2 type domain signature. 59 79 IPR013087 -
Trre11g02519 217 SUPERFAMILY beta-beta-alpha zinc fingers 54 83 IPR036236 -
Trre11g02519 217 ProSiteProfiles Zinc finger C2H2 type domain profile. 57 84 IPR013087 -
Trre11g02519 217 MobiDBLite consensus disorder prediction 74 115 - -
Trre11g02519 217 SMART c2h2final6 57 79 IPR013087 -
Trre11g02519 217 Gene3D Classic Zinc Finger 53 109 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g02519 Trre-Chr11 31098987 31099640 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g02519 37 211 C2H2 Transcription Factor Family AT3G23130 35.149 1.02e-27 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre11g02519 zf-C2H2_6 1.3e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g02519 - - gmx:100781722 190.274