Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g02516 ATGACAACAACAAGCTTCACCCAATTCTACGACTCATGGTACTCACAATTCAACAACTTAATCCACCAACTCACAATTTCATCAACCCAAACTTCAAACTCCGAAGAACTTATCCAAAAAGTTATGTCCCACTATGAAGACTATTACAAAGCTAAATCAACGGCTGTTGAGAAAGATCCACTCCACGTGTTATCATCTCCTTGGGCTACTTCACTTGAACGTTCACTTCATTGGATAGCTGGTTGGAGACCCACCACAGCTTTTCATCTCATATACACCGAATCTTCTCTTCTCTTTGAATCTCACATTGTTGATATTCTTCGTGGGTTTACCACTGGTGACCTTGGTGATCTTTCTCCTAATCAGTTTCGTCGTGTTAGTGACTTGCAATGTGATACTGTAAGTAACTCTATTTTTATTTTTTTATAA 429 0.3869 MTTTSFTQFYDSWYSQFNNLIHQLTISSTQTSNSEELIQKVMSHYEDYYKAKSTAVEKDPLHVLSSPWATSLERSLHWIAGWRPTTAFHLIYTESSLLFESHIVDILRGFTTGDLGDLSPNQFRRVSDLQCDTVSNSIFIFL 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g02516 142 ProSiteProfiles DOG1 domain profile. 3 142 IPR025422 GO:0006351|GO:0043565
Trre11g02516 142 PANTHER DOG1 DOMAIN-CONTAINING PROTEIN 5 135 - -
Trre11g02516 142 Pfam Seed dormancy control 18 93 IPR025422 GO:0006351|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g02516 Trre-Chr11 30994332 30994760 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g02516 5 106 bZIP Transcription Factor Family AT5G06960 29.524 3.33e-11 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g02516 - - lja:Lj5g3v0838850.1 201.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g02516 11 30994332 30994760 Trre11g02516 11 30994332 30994760 ECH