Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g02515 ATGTCGTTGATGAAAGTATTTCGATCTCGCAAATTCTCCAGATCCTTTAAAGAGGTTCAATCTCTCGATGCTATCTCCGATGACCGGAGAGGAATCTCCTGTCGTGAATCTGCGGACGGAACTGATTGGTCCACCATGTTACCGGATCTCCTTGCGGAAATTATTAAACGAGTTGACGTCGCCGAAGAACAGTGGCCACACCGCCAAAACGTCGTCGCTTGTGCTTGCGTTTGTAAACGGTGGAGAGATATCACACGTGAGATTGTTCGTTCACCTTCGCGTAACGGAAAAATCACTTTTCCTTCTTGTCTTAAACAGCCAGGACCACGCGACCTACCACATCAATGTCTTATAAAGCGGAATAAGAAGACTTCTACATTTTACCTTTATCTCGCCCTTTCATCATCATTCACAGACAAAGGGAAATTTCTATTAGCAGCTAGAAGATATAGGTGTGGTACCCATACTGAGTATGTTATATCACTTGATGCTGATGACATATCACAAGGAAGCAATGCCTATGTAGGCAAGTTAAGCTCGGATTTTCTTGGAACCAACTTCACAATTTATGACAGCCAGCCGCCTCATAATGGTGCCAAACCTTCGAGTTGCAAAGCTAGCCGGCGTTTTGGAAGCAAACAGATAAGCCCTCAAGTTCCTGCAGGTAACTTCGAGGCAGGGAATGTTTCCTACAAGTTCAACCTTTTGAAATCAAGAGGTCCAAGGAGAATGATTTGCTCTCTGAAGTCTACTGTCTCATTATCAATGGATGAAAGTTCAGACAAGTCTTTTGATGTCCTTAAGACGCACTCTAAAGAACAAGCCACTTCTGCATACACAATCTTGAAGAACAAAGCTCCAAGGTGGCACGAGCATTTACAGTGCTGGTGCTTGAACTTCCATGGTCGTGTGACAGTGGCATCCGTGAAGAACTTTCAGCTGGTTGCCACTGTGGACCAAAGCCAACCAGGCGGGAAAGGCGATGAAGAAACAGTTCTCCTCCAGTTTGGTAAAGTAGGGGATGATACTTTCACAATGGACTATAGACAACCCCTATCCGCCTTCCAGGCATTTGCCATTTGCTTAACTAGCTTTGGCACTAAACTAGCTTGTGAGTAA 1119 0.4477 MSLMKVFRSRKFSRSFKEVQSLDAISDDRRGISCRESADGTDWSTMLPDLLAEIIKRVDVAEEQWPHRQNVVACACVCKRWRDITREIVRSPSRNGKITFPSCLKQPGPRDLPHQCLIKRNKKTSTFYLYLALSSSFTDKGKFLLAARRYRCGTHTEYVISLDADDISQGSNAYVGKLSSDFLGTNFTIYDSQPPHNGAKPSSCKASRRFGSKQISPQVPAGNFEAGNVSYKFNLLKSRGPRRMICSLKSTVSLSMDESSDKSFDVLKTHSKEQATSAYTILKNKAPRWHEHLQCWCLNFHGRVTVASVKNFQLVATVDQSQPGGKGDEETVLLQFGKVGDDTFTMDYRQPLSAFQAFAICLTSFGTKLACE 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g02515 372 PRINTS Tubby superfamily signature 282 299 IPR000007 -
Trre11g02515 372 PRINTS Tubby superfamily signature 350 372 IPR000007 -
Trre11g02515 372 PRINTS Tubby superfamily signature 300 316 IPR000007 -
Trre11g02515 372 PRINTS Tubby superfamily signature 174 198 IPR000007 -
Trre11g02515 372 PRINTS Tubby superfamily signature 329 348 IPR000007 -
Trre11g02515 372 PRINTS Tubby superfamily signature 158 174 IPR000007 -
Trre11g02515 372 PRINTS Tubby superfamily signature 223 250 IPR000007 -
Trre11g02515 372 SUPERFAMILY Tubby C-terminal domain-like 93 372 IPR025659 -
Trre11g02515 372 Gene3D - 35 92 - -
Trre11g02515 372 Gene3D Tubby Protein; Chain A 99 372 IPR025659 -
Trre11g02515 372 PANTHER TUBBY-RELATED 40 370 - -
Trre11g02515 372 Pfam Tub family 104 367 IPR000007 -
Trre11g02515 372 SUPERFAMILY F-box domain 38 86 IPR036047 GO:0005515
Trre11g02515 372 ProSitePatterns Tub family signature 1. 300 313 IPR018066 -
Trre11g02515 372 Pfam F-box domain 48 90 IPR001810 GO:0005515
Trre11g02515 372 ProSitePatterns Tub family signature 2. 357 372 IPR018066 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g02515 Trre-Chr11 30964718 30967889 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g02515 1 372 TUB Transcription Factor Family AT1G53320 71.204 0.0 545
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Trre11g02515 Tub 2.2e-103 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g02515 K19600 - gmx:100808096 620.928