Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g02502 ATGGATGCTGGTAGAGTTCCACCTAGAAGGATTAGAATTGTTGCAAGAAATGACCCGCATCGAGATTTGCGTTTGGACATTGATGGAATGTCTTATGAGGAACTTCTTGCATTAGGTGAGAGGATTGGCAAAGTAAACACCGGTGTATCGGAGGAAATAATTACTTCTCAACTGAAAACAAAGTTATACACTCCTTACCCTAGTATTGATTTGAATGAGTTACCAATTGATTTGAATGAGTTACCTCCGGATGATGAAGAAATAGACACTTGCATGATATGTCAGGATGCATACCAATATCAAGAAAATATTGGAACCATTCAATGCGGGCACGAATTTCATGTCGATTGCATTTCAAAATGGTTAAAGATAAAAAATCAGTGCCCGATCTGCAAAACAGAAGCTATAACTACAACACAATAA 423 0.3759 MDAGRVPPRRIRIVARNDPHRDLRLDIDGMSYEELLALGERIGKVNTGVSEEIITSQLKTKLYTPYPSIDLNELPIDLNELPPDDEEIDTCMICQDAYQYQENIGTIQCGHEFHVDCISKWLKIKNQCPICKTEAITTTQ 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g02502 140 Pfam Ring finger domain 89 132 IPR001841 -
Trre11g02502 140 SUPERFAMILY RING/U-box 90 137 - -
Trre11g02502 140 ProSiteProfiles Zinc finger RING-type profile. 91 132 IPR001841 -
Trre11g02502 140 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 16 136 IPR045191 GO:0061630
Trre11g02502 140 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 71 138 IPR013083 -
Trre11g02502 140 SMART ring_2 91 131 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g02502 Trre-Chr11 30787275 30787936 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g02502 17 138 C3H Transcription Factor Family AT2G15530 50.806 3.32e-37 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g02502 K19041 - tpra:123896447 197.978