Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g02451 ATGACACCACGCGCCGATGAATACGAACAAGATAACATCGACGACGATGACGACGACGACGGTCTCAAAGAAGACATGGCTGCACTCGCGCGAGCTTGTATGTTCAACGACGATGAAATTCAATCTCAAGAAGATCCACTTTTGGCCACTGGAGACGCTATTGTCCCTTTCACTGTTACCGCCGACTCTGATTCCGATGAACAGAGTGATCTAGAATGTCTCAAGAGAGTTCAGAGTCTTTATCAGCCTAATAACGGCACTCTTCCTCCTCCGCAACCGACTACAGTTGCGTTCGACGATGACGAAGATGACTTCGAAACTGTTCGCGCCATTTTCAAACAGTTTTCTGCTTATGATGGAGGTGGAAGGGAAGCATGGGATGAGGGGAATCAGGCCCGGTGTTTAATCGGTGAGCAATATGTTGCCAAGAGCTCCATATCTAACAGCTCAGATGCCGATGAATTGTGTCCTGATTCGCCATTACATGTTAATGACGCCAAAAAAGATCAAGCTTTCCTCCGTCAGCTCAAGCTCTTATTGATGCTGTCAAGAAGAATAGAGCTCTCCAGAAATTTCTTCGAAGTTTCATGCAGTAAAAGAACGGCGAGTGCTTTATCATTGAAGAAGGATCCGCGTGCTCAGTTAATATCATCTAAGAAGCCTGTTGCAACAAAAAAGTCAAAGAATAAAAAAGTAGCAATGTGTTATGGCCCAGATGAGAATTCTCATGTTGCTAACTATAAGATGGTATTGGAAAGATTTCCGCTTTCATTGGATCGAAAAAAATGGTCAAATAAGGAAATGGAAAATCTTTCGAAGGGAATTAAGCAACAGTTCCAAGAAACAGTGCTTCAAATTTCAGTAGATAGAATGAGTTCAGGTTACTCACCTGGAGATGCAAATGACATGGATAGCATAATTGAATCAGTTAAAGATATTGAAATTACCCCAGCGAGGATTAGAGAATTTTTACCTAAAGTTAATTGGGATCGATTGGCTTCTATGTATGTTGCTGGCCGTACTGGTGGTGAATGTGAATCAAGGTGGTTGAATTGTGAAGACCCTTTGATCAACCATGGCCCATGGACTTTAGAAGAGGATAGGTCTCTTTTGATTATTGTACAAGAGAAGAGCATCCGGAACTGGTTTGATATTGCTGTATCATTGGCCACAAACAGGATTCCATTTCAATGCTTGGCACGATTCCAAAGGAGCTTAAATTCTTCGATGATAAATAGTGAATGGACTGAGGAAGAAGATGCCGAACTTTGTTCTGCTGTTGCATATTTTGGTGATAGTAATTGGCAGAATGTTGCTTCTGTTTTAGAACGGCGGACGGGAACCCAGTGCTCGAATAGGTTGTCAAAGAAAACCAGATACTAG 1383 0.423 MTPRADEYEQDNIDDDDDDDGLKEDMAALARACMFNDDEIQSQEDPLLATGDAIVPFTVTADSDSDEQSDLECLKRVQSLYQPNNGTLPPPQPTTVAFDDDEDDFETVRAIFKQFSAYDGGGREAWDEGNQARCLIGEQYVAKSSISNSSDADELCPDSPLHVNDAKKDQAFLRQLKLLLMLSRRIELSRNFFEVSCSKRTASALSLKKDPRAQLISSKKPVATKKSKNKKVAMCYGPDENSHVANYKMVLERFPLSLDRKKWSNKEMENLSKGIKQQFQETVLQISVDRMSSGYSPGDANDMDSIIESVKDIEITPARIREFLPKVNWDRLASMYVAGRTGGECESRWLNCEDPLINHGPWTLEEDRSLLIIVQEKSIRNWFDIAVSLATNRIPFQCLARFQRSLNSSMINSEWTEEEDAELCSAVAYFGDSNWQNVASVLERRTGTQCSNRLSKKTRY 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g02451 460 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 354 410 IPR017930 -
Trre11g02451 460 Gene3D - 259 355 - -
Trre11g02451 460 MobiDBLite consensus disorder prediction 1 21 - -
Trre11g02451 460 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 415 460 IPR017930 -
Trre11g02451 460 Pfam Myb-like DNA-binding domain 362 423 - -
Trre11g02451 460 Gene3D - 356 405 - -
Trre11g02451 460 Gene3D - 406 456 - -
Trre11g02451 460 SMART sant 259 355 IPR001005 -
Trre11g02451 460 SMART sant 358 408 IPR001005 -
Trre11g02451 460 SMART sant 411 460 IPR001005 -
Trre11g02451 460 CDD SANT 414 453 IPR001005 -
Trre11g02451 460 ProSiteProfiles Myb-like domain profile. 407 458 IPR001005 -
Trre11g02451 460 PANTHER SNRNA-ACTIVATING PROTEIN COMPLEX SUBUNIT 4 14 456 - -
Trre11g02451 460 SUPERFAMILY Homeodomain-like 389 455 IPR009057 -
Trre11g02451 460 SUPERFAMILY Homeodomain-like 335 387 IPR009057 -
Trre11g02451 460 ProSiteProfiles Myb-like domain profile. 354 406 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g02451 Trre-Chr11 29452886 29458186 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g02451 193 459 MYB-Related Transcription Factor Family AT3G18100 49.104 1.69e-87 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Trre11g02451 Myb_DNA-bind_6 9.3e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g02451 K09422 - gmx:778073 484.952