Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g02437 ATGACACCACGCGCCGATGAATACGAACAAGATAGCATCGACGACGATGACGACGACGACGGTCTCAAAGAAGACATGGCTGCACTCTCGCGAGCTTGTATGCTCAACGACGATGAAATTCAATCTCAAGAAGATCCACTTTTGGCCACCGGTGACGCTATTGTTCCCTTCACTGTTACCGCCGACTCTGATTCCGATGAACAGAGTGATCTAGAATGTCTCAAGAGAGTTCAGAGTCTCTATCAGCCTAATAACGGCACTCTTCCTCCTCCGCAACCGACTACAGCTGCGTTCGACGATGACGAAGATGACTTCGAAACTGTTCGCGCCATTTTCAAACGGTTTTCTGCTTATGATGGAGGTGGAAGGGAAGCATGGGATGAGGGGAATCAGGCCCGGTGTTTAATCGGTGAGCAATATGTTGCCAAGAGCTCCATATCTAACAGCTCAGATGCCGATGAATTGTGTCCTGATTCGCCATTACATGTTAATGACGCCAAGTTGCTGATTAAACCATGTGGTTTTGACGAGAGTTGTGAAAATGATGCCCACTTGTCTTCTCAATTACCGAAGAAAAGATCAAGCTTTCCTCCGTCAGCTCAAGCTCTTATTGATGCTGTCAAGAAGAATAGAGCTCTCCAGAAATTTCTTCGAAGTAAGTTGATTGAAATTGAAGCAAAAATTGAGCAAAACAAAAAGCTAAGGGACAAAGTTAAACTCCTTAAGGATTTCCAGGTTTCATGCAGTAAAAGAACGGCGAGTGCTTTATCATTGAAGAAGGATCCGCGTGTTCAGTTAATATCATCTAAGAAGCCTGTTGCAACAAAAAAGTCAAAGAATAAAAAAGTAGCAATGTGTTATGGCCCAGATGAGAATTCTCATGTTGCTAACTATAAGATGGTATTGGAAAGATTTCCGCTTTCGTTGGATCGAAAAAAATGGTCAAATAAGGAAATGGAAAATCTTTCGAAGGGAATTAAGCAACAGTTCCAAGAAACAGTGCTTCAAATTTCAGTAGATAGAATGAGTTCAGGTTACTCACCTGGAGATGCAAATGACATGGATAGCATAATTGAATCAGTTAAAGATATTGAAATTACCCCAGTGAGGATTAGAGAATTTTTACCTAAAGTTAATTGGGATCGATTGGCTTCTATGTATGTTGCTGGCCGTACTGGTGGTGAATGTGAATCAAGGTGGTTGAATTGTGAAGACCCTTTGATCAACCATGGCCCATGGACTTTAGAAGAGGATAGGTCTCTTTTGATTATTGTACAAGAGAAGGGCATCCGGAACTGGTTTGATATTGCTGTATCATTGGCCACAAACAGGATTCCATTTCAATGCTTGGCACGATTCCAAAGGAGCTTAAATTCTTCGATGATAAATAGTGAATGGACTGAGGAAGAAGATGCCCAACTTTGTTCTGCTGTTGCATATTTTGGTGATAGTAATTGGCAGAATGTTGCTTCTGTTTTAGAACGGCGGACGGGAACCCAGTGCTCGAATAGATGGAAGAAATCAATTTGTCCTGTGAGGAAAGGGAGCTTTACTCCTGAGGAGGATGAACGCCTTACAGTAGCGGTCATGCTGTTTGGCCGGAAATGGAATCAAATAGCCAAATATGTTCCTGGCCGGATCCAATCTCAGTGTAGGGAGAGATACCTTAATAGTTTGGATCCTTCTTTGAAATGGGGTGGGTGGACTGAGGAAGAGGATTTAAGATTAGAAGCTGCAATCACCAAGTATGGATATTGCTGGTCTAAAGTTGCAGAAGATGTGCCTCCCCGCACCGATTCCCAATGCCGAAAGAGATGGAAGGTGATATGTCCTGAACAAGTTCCTCTGCTTAAAGAAGCAAGAAAGCGACAAAGGTCTCTTCTTGCCAGTAACTTTGTCGATCGAGAATCTGAACGTCCAGTCCTTACACTGAATGACTTTATTCCTTTACAAATGGTAGTTTCACCATCGAATGTTGGTGCTGAAAGTCTCCAAAGGAAGCGGAAGAGACAGACGCGCGGCGTTCACAGGAAAGTGAAGTCAAAAAGACATGCAAAAAGGACTCAACTTTGTACCGAAGAAGCACAAGATGCAGGTCTCAAGGAAGAGAGGCCTAAAAGACATACAAAGAAGGGGTCGCGCTGTCCCGATGATGTACAAGATATAGTTCCCAAAAAAGAGAAGCCTAAAAGACATTCAAAGAAGGCTCGAATTTGTACCGAGGAAGTACAATATAAAGCAGCATATAGTGATAAGGTCAAGACTTGTGGTGGAGGTGTTCCCTTCTTTGTACCGAGCAATATTCCCAAAAAAATGAGATCTAAAAGACGTGCTAGAAAGGCTCAAATTCTTCCTCACAAGCCATGTATCAAGAGTTCGGAAACTGAAGATGGAGACGACATGACACTTGCATGCTTTTTGCACAACAAATCAAAGAAAAAACTATCTAAATGTACCAAAAATGCTAGCCAAGCATCGTCTTCCTCTAAGACAAAAACTGTATCTAAGCAGGTTGAAAATCAAATCTCATGTGGTGAGCAACACAGATTGTCTGTGTCATGTGCTATTGATGGAACTAAAGGTTTGCTAATGCAAGCGGAGGTTGATTCTAGCAGACAAGTGAGAAAACTGGAAAGTGCAAATGCAGCTCGAAAACCAGAGGATGCACACAATTTGAATGGTGATAACAAGGATATACCTCTTAAGTTCTATGTGAGAAAGAAAAAGAAATTGAGCCAAGCTACTGAAGGACGCGGTGCATTTTCTCCCTCCAAATTGAAAAAGGGATCTACATTACTCCATGGAAACATGCCAGTCATAATTTCTGACGGCAGTGAACCATCCATGTCAAAAATTGTTGAAGATGAGACTGTTTTACATGGTGGTGTGGCTGAACCCACAACCATCGATGTGGCTGAAGAAGATGCTGTTTTACATGGTGTTGTGGCCGAAGCTGAACCCACAACCGCCGATGTTGTTGAAGAGGAGACTGTTCTGCATGGTGGTGTCGCTGATGCTAAACCTACAAACATTGATTTGGAAGAAAACGATGACCTGCTTATTTCTTTCCTGCTAAACAAGACAAAGAAACAACGTAGATGGATCAATATTAGGAAATGA 3120 0.4234 MTPRADEYEQDSIDDDDDDDGLKEDMAALSRACMLNDDEIQSQEDPLLATGDAIVPFTVTADSDSDEQSDLECLKRVQSLYQPNNGTLPPPQPTTAAFDDDEDDFETVRAIFKRFSAYDGGGREAWDEGNQARCLIGEQYVAKSSISNSSDADELCPDSPLHVNDAKLLIKPCGFDESCENDAHLSSQLPKKRSSFPPSAQALIDAVKKNRALQKFLRSKLIEIEAKIEQNKKLRDKVKLLKDFQVSCSKRTASALSLKKDPRVQLISSKKPVATKKSKNKKVAMCYGPDENSHVANYKMVLERFPLSLDRKKWSNKEMENLSKGIKQQFQETVLQISVDRMSSGYSPGDANDMDSIIESVKDIEITPVRIREFLPKVNWDRLASMYVAGRTGGECESRWLNCEDPLINHGPWTLEEDRSLLIIVQEKGIRNWFDIAVSLATNRIPFQCLARFQRSLNSSMINSEWTEEEDAQLCSAVAYFGDSNWQNVASVLERRTGTQCSNRWKKSICPVRKGSFTPEEDERLTVAVMLFGRKWNQIAKYVPGRIQSQCRERYLNSLDPSLKWGGWTEEEDLRLEAAITKYGYCWSKVAEDVPPRTDSQCRKRWKVICPEQVPLLKEARKRQRSLLASNFVDRESERPVLTLNDFIPLQMVVSPSNVGAESLQRKRKRQTRGVHRKVKSKRHAKRTQLCTEEAQDAGLKEERPKRHTKKGSRCPDDVQDIVPKKEKPKRHSKKARICTEEVQYKAAYSDKVKTCGGGVPFFVPSNIPKKMRSKRRARKAQILPHKPCIKSSETEDGDDMTLACFLHNKSKKKLSKCTKNASQASSSSKTKTVSKQVENQISCGEQHRLSVSCAIDGTKGLLMQAEVDSSRQVRKLESANAARKPEDAHNLNGDNKDIPLKFYVRKKKKLSQATEGRGAFSPSKLKKGSTLLHGNMPVIISDGSEPSMSKIVEDETVLHGGVAEPTTIDVAEEDAVLHGVVAEAEPTTADVVEEETVLHGGVADAKPTNIDLEENDDLLISFLLNKTKKQRRWINIRK 1039
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g02437 1039 Pfam Myb-like DNA-binding domain 413 474 - -
Trre11g02437 1039 MobiDBLite consensus disorder prediction 686 727 - -
Trre11g02437 1039 ProSiteProfiles Myb-like domain profile. 560 610 IPR001005 -
Trre11g02437 1039 Gene3D - 566 611 - -
Trre11g02437 1039 ProSiteProfiles Myb-like domain profile. 405 457 IPR001005 -
Trre11g02437 1039 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 512 559 IPR017930 -
Trre11g02437 1039 Gene3D - 407 456 - -
Trre11g02437 1039 Gene3D - 457 508 - -
Trre11g02437 1039 SUPERFAMILY Homeodomain-like 539 610 IPR009057 -
Trre11g02437 1039 SUPERFAMILY Homeodomain-like 386 438 IPR009057 -
Trre11g02437 1039 SUPERFAMILY Homeodomain-like 461 555 IPR009057 -
Trre11g02437 1039 MobiDBLite consensus disorder prediction 1 22 - -
Trre11g02437 1039 Gene3D - 511 565 - -
Trre11g02437 1039 CDD SANT 516 559 IPR001005 -
Trre11g02437 1039 MobiDBLite consensus disorder prediction 669 685 - -
Trre11g02437 1039 PANTHER SNRNA-ACTIVATING PROTEIN COMPLEX SUBUNIT 4 14 904 - -
Trre11g02437 1039 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 405 461 IPR017930 -
Trre11g02437 1039 ProSiteProfiles Myb-like domain profile. 513 559 IPR001005 -
Trre11g02437 1039 ProSiteProfiles Myb-like domain profile. 458 509 IPR001005 -
Trre11g02437 1039 MobiDBLite consensus disorder prediction 659 735 - -
Trre11g02437 1039 CDD SANT 412 457 IPR001005 -
Trre11g02437 1039 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 560 614 IPR017930 -
Trre11g02437 1039 SMART sant 310 406 IPR001005 -
Trre11g02437 1039 SMART sant 513 561 IPR001005 -
Trre11g02437 1039 SMART sant 564 612 IPR001005 -
Trre11g02437 1039 SMART sant 462 511 IPR001005 -
Trre11g02437 1039 SMART sant 409 459 IPR001005 -
Trre11g02437 1039 CDD SANT 465 507 IPR001005 -
Trre11g02437 1039 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 466 507 IPR017930 -
Trre11g02437 1039 CDD SANT 568 607 IPR001005 -
Trre11g02437 1039 Coils Coil 217 237 - -
Trre11g02437 1039 Pfam Myb-like DNA-binding domain 567 607 IPR001005 -
Trre11g02437 1039 Pfam Myb-like DNA-binding domain 514 557 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g02437 Trre-Chr11 29092231 29099401 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g02437 188 742 MYB-Related Transcription Factor Family AT3G18100 46.644 1.46e-173 522
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre11g02437 Myb_DNA-bind_6 5.6e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g02437 K09422 - gmx:100818474 1007.28