Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g02419 ATGGATTGCCGATTTGAGACCGCAGAAACTCGAAGGAACAAGTGTGCAGCATGCTATAGGCAGTTCAACAAGGTGCAGCACCTAGTGGATCACATGAAGATCTCTTACCATTCTGTTCATGAACCAACTTGTGGCGTTTGCAGGAAACATTGCAGATCTTTTGAGTCTCTAAGGGAACATCTTATAGGTCCATTGCCAAAACAAGAATGCAGAGAAATCTTTGCCAACCGAGGGTGCAAGTTTTGCTTGAAAGTCCTTGATAGCCCTAACTCTCGAAGGATTCACCAACAAAAGTGCCAACTCAATGGATTAAATGGAATATGCGGCCGCTTTTCAAACCTTGGAATTCGCGATAATTTGACAATTGGTGGTGGAAGAGGACCACAAGTAGTTGCACTAGCTTGTAAAATGGTGGGAGGAGGAAGTGATGGGTCATTGGATATATGTGCAAGAGTTTGCTTAATAGATGAGAATGAGAACATCATCTTCCATTCTTATGTTACTCCACCAATTCCAGTTACAAACTTCAGAGGAGGAAAAGCTAGGATTCTTGTGGGTCATGGTTTAGATCATGACCTTGCTTCTTTGCAAATTGAGTATCCAACACAAAAAATAAGGGACACTGCAAAATACCCTCCACTCATGAAAACAAGCAAGCTCAGCAATTCACTCAAATACTTAACACAAGCATATCTTGGATATGACATTCAAACTGGGATACAAGATCCTTATGATGATTGTGTTGCTGCAATGAGACTATACATAAGAATGAGAGCACAAATACACAAAATAGAAGATTACCCTTTGGCTTCTGATCCACAAAACAGAAACAATTTTGCTTCATGGAGGCAAAGTGAGCTTGAAAGAATGAGTCCTGAACATATGCTAGATATCTCAAGATCTGACTACTACTGCTGGTGCATGGATCCATGA 933 0.4084 MDCRFETAETRRNKCAACYRQFNKVQHLVDHMKISYHSVHEPTCGVCRKHCRSFESLREHLIGPLPKQECREIFANRGCKFCLKVLDSPNSRRIHQQKCQLNGLNGICGRFSNLGIRDNLTIGGGRGPQVVALACKMVGGGSDGSLDICARVCLIDENENIIFHSYVTPPIPVTNFRGGKARILVGHGLDHDLASLQIEYPTQKIRDTAKYPPLMKTSKLSNSLKYLTQAYLGYDIQTGIQDPYDDCVAAMRLYIRMRAQIHKIEDYPLASDPQNRNNFASWRQSELERMSPEHMLDISRSDYYCWCMDP 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g02419 310 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 17 177 IPR047021 GO:0004527
Trre11g02419 310 SMART exoiiiendus 129 263 IPR013520 -
Trre11g02419 310 ProSiteProfiles Zinc finger C2H2 type domain profile. 13 42 IPR013087 -
Trre11g02419 310 ProSitePatterns Zinc finger C2H2 type domain signature. 15 37 IPR013087 -
Trre11g02419 310 Gene3D - 127 178 IPR036397 GO:0003676
Trre11g02419 310 Gene3D - 179 270 IPR036397 GO:0003676
Trre11g02419 310 SUPERFAMILY Ribonuclease H-like 143 261 IPR012337 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g02419 Trre-Chr11 28797181 28799837 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g02419 1 309 C2H2 Transcription Factor Family AT3G27970 64.689 3.80e-170 474
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre11g02419 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g02419 - - gmx:100813973 555.829