Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g02418 ATGGATTGCCGATTTGAGACCGCAGAAACTCGAAGGAACAAGTGTGCAGCATGCTATAGGCAGTTCAACAAGGTGCAGCACCTAGTGGATCACATGAAGATCTCTTACCATTCTGTTCATGAACCAACTTGTGGCGTTTGCAGGAAACATTGCAGATCTTTTGAGTCTCTAAGGGAACATCTTATAGGTCCATTGCCAAAACAAGAATGCAGAGAAATCTTTGCCAACCGAGGGTGCAAGTTTTGCTTGAAAGTCCTTGATAGCCCTAACTCTCGAAGGATTCACCAACAAAAGTGCCAACTCAATGGATTAAATGGAATATGCGGCCGCTTTTCAAACCTTGGAATTCGCGATAATTTGACAATTGGTGGTGGAAGAGGACCACAAGTAGTTGCACTAGCTTGTAAAATGTTACAAACTTCAGGTATTAGACATGAATACTTAAGGGATGCAATGCCATTGAAACTAGTTCAAAGGAAGATTCAAGAGTTCCTTTGTAATGGAGAACCTATTTGGACAATTCGTTCAAGAGGAGGAAAAGCTAGGATTCTTGTGGGTCATGGTTTAGATCATGACCTTGCTTCTTTGCAAATTGAGTATCCAACACAAAAAATAAGGGACACTGCAAAATACCCTCCACTCATGAAAACAAGCAAGCTCAGCAATTCACTCAAATACTTAACACAAGCATATCTTGGATATGACATTCAAACTGGGATACAAGATCCTTATGATGATTGTGTTGCTGCAATGAGACTATACATAAGAATGAGAGCACAAATACACAAAATAGAAGATTACCCTTTGGCTTCTGATCCACAAAACAGAAACAATTTTGCTTCATGGAGGCAAAGTGAGCTTGAAAGAATGAGTCCTGAACATATGCTAGATATCTCAAGATCTGACTACTACTGCTGGTGCATGGATCCATGA 933 0.403 MDCRFETAETRRNKCAACYRQFNKVQHLVDHMKISYHSVHEPTCGVCRKHCRSFESLREHLIGPLPKQECREIFANRGCKFCLKVLDSPNSRRIHQQKCQLNGLNGICGRFSNLGIRDNLTIGGGRGPQVVALACKMLQTSGIRHEYLRDAMPLKLVQRKIQEFLCNGEPIWTIRSRGGKARILVGHGLDHDLASLQIEYPTQKIRDTAKYPPLMKTSKLSNSLKYLTQAYLGYDIQTGIQDPYDDCVAAMRLYIRMRAQIHKIEDYPLASDPQNRNNFASWRQSELERMSPEHMLDISRSDYYCWCMDP 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g02418 310 SUPERFAMILY Ribonuclease H-like 138 261 IPR012337 -
Trre11g02418 310 SMART exoiiiendus 108 263 IPR013520 -
Trre11g02418 310 ProSiteProfiles Zinc finger C2H2 type domain profile. 13 42 IPR013087 -
Trre11g02418 310 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 17 97 IPR047021 GO:0004527
Trre11g02418 310 ProSitePatterns Zinc finger C2H2 type domain signature. 15 37 IPR013087 -
Trre11g02418 310 Gene3D - 133 270 IPR036397 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g02418 Trre-Chr11 28797181 28799837 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g02418 1 309 C2H2 Transcription Factor Family AT3G27970 65.819 1.62e-170 475
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre11g02418 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g02418 - - gmx:100813973 541.191