Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g02398 ATGGATATTCGACGCGCTTCACACCCCGTTATCGATCCCAAAGTAAGGCGCGTTGGTTTCTTCGACCAACCCGAACCCGAACCACCGCACCTTCCGGACTCTCCACCACCCGACCCGGTCTCATCAGTCATCTTGCCGCCTCCACGACTTCTTTCCGAACGAACCGCCGCCGTTCCTGTTCCCGAGTCCAGATTCCGACGCAACGAACTCGACGATCAGGTTCCGATTGGAAGCTACAATCCCACTCGGTGTGTGCTCAAAACCTCGCCGACGACTTCGATTACTTCTAGCAGTGCCGGAATCATTGACGGCGAATTCTCTGAGGATTGCTCTGGTGCCGGATGGTTTCGTGGAAGCGAATTAAGTTTTCCTGACGGAGGGTTGGATATACCGGCTGTGAAGCCTTGTGAAGTTTTGGCGGAGAATAGGTCTAATGTGGCGGTGAATGTGAATAATCTTCGTAGAGACACTGAAAAGAAGCACGAGGCTGTCAAAGAAGTATGTCCTGATACGCCGTCAGTTTCACAGCCATTGAAAGCAAAAACTACAAAGGCTGAGACACGAGCCCTGCAGGAGGCACAAAGAGCTGCAAAAGCTTCTAAAGCTAATGGAAGTTCAGCAGTTGCTGAATCTGGCAAAGCATCCCCAGCGAAAAGTAAAAAGCAGTCTTCACAAAAGAAAGACGGTCCTCTAGTTACATCATCGGTTACTATTGATAAGAAATCTGTTAATCATCCTTTGGAGAAAGAGAGAAAAAAAGATCCTCCTCCTCAACGAATGCAATTTGATGATCATAACAGAGTGGAAAAAGCAAAAAAGCGTGCACTAGTAAATCAAACTGAAGCAAGAAACAGAGTTGAATTGTTTCGGCATTTGCCTCAATATGAACATGGGAATCAGCTTCCTAATCTTGAGTCAAGGCTTTTCCAACTCGACTCAGTGCATCCTGCTGTGTTCAAGGTTGGATTACGTTATATGGCCGGAGATATATCAGAAGTTAATACTCGTTGTACCGAAATGCTTAGAGCGCTTCAGGATGCCATTATAGACTACTCCACTCCGCCTGAAAAAGTACTTATTAGGGATTTAACTGCAAAAATTAATAGTTATGTTTCATTTATTAGCGAATGCCGACCGCTTTCTATTAGCATGGGAAATGTAATTAGGTTTGTGAAGAGTCAAATTGCCAAGTTGCCCTTAAGTTATACTGATGCTGAGGCAAAAGCAGCACTTTGTTCTGATATTGACCGATTCATTAATGAAAAAATAATTATTGCGGATAAGGTGATTGTTGGACATGCTACTACCAAAATTAGGGACGGTGATGTTCTTCTAACATATGGATTGTCTTGTGTTGTTGAGATGATTCTCTTGTCTGCTCATGAACTTGGGAAAAAATTCCGAGTTGTGGTGGTAGACTCACGACCAAAGTTTGAAAGTCAGGCCTTACTTGCTAGGCTTATGGCCAAGGGACTGAGTTGTACGTATACTCATATAAATGCTGTTTCTTATATCATGCACGAGGTTACAAAAGTTTTTCTTGGAGCTTCTGCTGTCCTGTCTAATGGAACTGTACTTTCAAGGATTGGGACAGCATGTATTGCAATGGTAGCTTATGAATTTCGTGTTCCTGTATTGATCTGTTGTGAAGCTTTTAAGTTTCATGAAAGGGTGCTACTTGATTCAATATGTTGCAATGAAATAGGCGACCCAGGTGCTGTTGCTACAGTTCCTGGAAGAATGGATATCAATTATCTGGACAATTGGACAAACAAAGAAAATTTGCAGCTTTTGAATTTGATGTATGATGTTACTCCTTCGGATTACGTCTCAGTTATTGTTACAGATCATGGAATGATCCCTCCTACAAGTGTGCCTGTGATCGTACGCGAGTATGGACAAGAGCATTACATTACTTGA 1920 0.4323 MDIRRASHPVIDPKVRRVGFFDQPEPEPPHLPDSPPPDPVSSVILPPPRLLSERTAAVPVPESRFRRNELDDQVPIGSYNPTRCVLKTSPTTSITSSSAGIIDGEFSEDCSGAGWFRGSELSFPDGGLDIPAVKPCEVLAENRSNVAVNVNNLRRDTEKKHEAVKEVCPDTPSVSQPLKAKTTKAETRALQEAQRAAKASKANGSSAVAESGKASPAKSKKQSSQKKDGPLVTSSVTIDKKSVNHPLEKERKKDPPPQRMQFDDHNRVEKAKKRALVNQTEARNRVELFRHLPQYEHGNQLPNLESRLFQLDSVHPAVFKVGLRYMAGDISEVNTRCTEMLRALQDAIIDYSTPPEKVLIRDLTAKINSYVSFISECRPLSISMGNVIRFVKSQIAKLPLSYTDAEAKAALCSDIDRFINEKIIIADKVIVGHATTKIRDGDVLLTYGLSCVVEMILLSAHELGKKFRVVVVDSRPKFESQALLARLMAKGLSCTYTHINAVSYIMHEVTKVFLGASAVLSNGTVLSRIGTACIAMVAYEFRVPVLICCEAFKFHERVLLDSICCNEIGDPGAVATVPGRMDINYLDNWTNKENLQLLNLMYDVTPSDYVSVIVTDHGMIPPTSVPVIVREYGQEHYIT 639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g02398 639 MobiDBLite consensus disorder prediction 226 241 - -
Trre11g02398 639 MobiDBLite consensus disorder prediction 25 44 - -
Trre11g02398 639 Pfam Initiation factor 2 subunit family 334 622 IPR000649 GO:0044237
Trre11g02398 639 MobiDBLite consensus disorder prediction 198 219 - -
Trre11g02398 639 MobiDBLite consensus disorder prediction 1 48 - -
Trre11g02398 639 SUPERFAMILY NagB/RpiA/CoA transferase-like 330 632 IPR037171 -
Trre11g02398 639 MobiDBLite consensus disorder prediction 153 167 - -
Trre11g02398 639 MobiDBLite consensus disorder prediction 153 269 - -
Trre11g02398 639 MobiDBLite consensus disorder prediction 242 269 - -
Trre11g02398 639 Gene3D - 425 632 IPR042529 -
Trre11g02398 639 PANTHER TRANSLATION INITIATION FACTOR EIF-2B 149 636 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g02398 Trre-Chr11 28538805 28543871 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g02398 1 638 Eukaryotic Initiation Factors Gene Family AT5G38640 55.656 0.0 657
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g02398 K03680 - gmx:100778711 826.624