Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g02395 ATGGCGGAATTAGACCACGACCACCACACCTCACCGGAGCACGACAACCACAGTCATAATAACAAGAAGCTTCGCAAGCGGAAAAGATCTCGTAAATTGGAACAAGCAGTTGAAAAACAACAAGAGGAGGAGAACATTGAAAACGCAGAATCTGAAGAAGAAATAGAAGAAGAGGAAAATAATCATGAACCACAACAAGGAGAAGAAGAAGAAGAAGAAAAAGTGGAGACTGTTGTGTCTTCTGGAATTATGAGCAAAGAGTCTTTTTCGTCTCTAGGGTTATCTCAACCTACTTCTAAGTCTATAACTGATATGGGTTTTAATCGTATGACTCAGATTCAAGCAAAAGCGATTCCGCCGCTTTTGATGGGAAAGGATGTTCTTGGTGCTGCAAGGACAGGTGCTGGTAAAACACTTGCATTTTTAATTCCAGCTGTGGAATTGTTATACAATGTTCAGTTCACTCCTCGTAACGGAACCGGCGTCGTTGTTATTTGTCCAACTAGAGAGCTTGCCATTCAGACACATGCTGTGGCAAAGGAACTACTGAAGTATCATTCGCAAACTCTTGGATTAGTTATTGGGGGTTCGGGTAGAAAGGGAGAAGCCGAGCGCATTGTTAAAGGGGTAAATCTGTTGGTTGCAACACCTGGTCGGCTTCTTGATCACCTTCAGAATACAAAAGCGTTCATATATAAAAACTTGAAGTGTCTCATGATTGATGAAGCAGACAGGATATTGGAAGCAAACTTTGAGGAGGAAATGAAGCAGATCATTAATATACTTCCAAAGAAAAGGCAAACAGCTTTGTTTTCGGCCACACAAACAAAGAAGGTTGAGGATCTCGCCCGCTTATCTTTTCAGACACCTCCTGTCTATGTTGACGTAGATGATGGGAGAAAAAAGGTCACAGTTGAAGGATTGGAACAGGGCTATGTTGTTGTTCCCTGTGCCAAGCGTCTTGTTGTTCTATATTCATTCTTGAAGAGATTTCAATCCAAAAAAGTGATGGTTTTTTTCTCTTCATGCAACTCTGTCAAATTCCATGCCGATCTCCTTAAGTTCATTGGATTAGACTGTTTAAATATTCACGGAAAACAAAAGCAGAATTCTCGGACAACTACCTTCTTCAACTTCTGCAAAGCAGAAAAGGGGATCTTGCTCTGTACTGATGTTGCTGCTCGTGGACTTGACATTCCTGATGTGGACTGGATTGTGCAGTATGATCCACCTGATGAACCAAAGGAATATATCCACAGAGTTGGTAGAACAGCTCGTGGAGAAGGTGGAAAAGGAAATGCTTTACTTTTCCTGATCCCTGAAGAAATGCAATTTCTTCGCTATTTGAAGGCAGCAAAGATTCCTGTGAAAGAGTATGCATTTGATGATAAAAAGCTTGCAAATGTACAATCTCAGCTGGAGAAGATGGTAGCCAGCATTTATCATCTGAACACTTTGGCTAAAGAGGCTTATAGGTCATATATATTGGCATATAATGCACATTCTATGAAGGAAATATTCAATGTTCACCGCCTTGATTTACAGGCTGTTGCTACTTCATTCAGTTTTTCAAACCCACCAAAGATAAATCTGAATATAGACAGCAGTGCTTCAAAGCATAGGAAGAAAATCCGCAAAGTGGAAGGAAGAAGACATTGA 1659 0.4075 MAELDHDHHTSPEHDNHSHNNKKLRKRKRSRKLEQAVEKQQEEENIENAESEEEIEEEENNHEPQQGEEEEEEKVETVVSSGIMSKESFSSLGLSQPTSKSITDMGFNRMTQIQAKAIPPLLMGKDVLGAARTGAGKTLAFLIPAVELLYNVQFTPRNGTGVVVICPTRELAIQTHAVAKELLKYHSQTLGLVIGGSGRKGEAERIVKGVNLLVATPGRLLDHLQNTKAFIYKNLKCLMIDEADRILEANFEEEMKQIINILPKKRQTALFSATQTKKVEDLARLSFQTPPVYVDVDDGRKKVTVEGLEQGYVVVPCAKRLVVLYSFLKRFQSKKVMVFFSSCNSVKFHADLLKFIGLDCLNIHGKQKQNSRTTTFFNFCKAEKGILLCTDVAARGLDIPDVDWIVQYDPPDEPKEYIHRVGRTARGEGGKGNALLFLIPEEMQFLRYLKAAKIPVKEYAFDDKKLANVQSQLEKMVASIYHLNTLAKEAYRSYILAYNAHSMKEIFNVHRLDLQAVATSFSFSNPPKINLNIDSSASKHRKKIRKVEGRRH 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g02395 552 CDD SF2_C_DEAD 308 438 - -
Trre11g02395 552 MobiDBLite consensus disorder prediction 1 79 - -
Trre11g02395 552 Pfam Helicase conserved C-terminal domain 322 427 IPR001650 -
Trre11g02395 552 Gene3D - 306 548 IPR027417 -
Trre11g02395 552 Gene3D - 13 297 IPR027417 -
Trre11g02395 552 Coils Coil 537 552 - -
Trre11g02395 552 PANTHER RNA HELICASE 42 472 - -
Trre11g02395 552 MobiDBLite consensus disorder prediction 1 19 - -
Trre11g02395 552 SMART ultradead3 106 311 IPR014001 -
Trre11g02395 552 CDD DEADc_DDX18 98 295 IPR044773 GO:0003724|GO:0005524
Trre11g02395 552 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 118 293 IPR014001 -
Trre11g02395 552 MobiDBLite consensus disorder prediction 45 75 - -
Trre11g02395 552 SMART helicmild6 347 428 IPR001650 -
Trre11g02395 552 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 239 247 IPR000629 -
Trre11g02395 552 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 323 477 IPR001650 -
Trre11g02395 552 FunFam RNA helicase 304 534 - -
Trre11g02395 552 Pfam DEAD/DEAH box helicase 111 282 IPR011545 GO:0003676|GO:0005524
Trre11g02395 552 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 159 449 IPR027417 -
Trre11g02395 552 Pfam Domain of unknown function (DUF4217) 469 529 IPR025313 -
Trre11g02395 552 Coils Coil 23 68 - -
Trre11g02395 552 SMART DUF4217_3 468 531 IPR025313 -
Trre11g02395 552 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 87 115 IPR014014 GO:0003724
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g02395 Trre-Chr11 28508432 28513284 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g02395 87 446 Eukaryotic Initiation Factors Gene Family AT3G13920 30.939 6.37e-47 167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g02395 K13179 - gmx:100798290 880.167