Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g02388 ATGACTATGATTAATACCATCCCTTTTTCTATTGAAATGGTCTTAATGGATGCTGATGGTGGTAGAATCCATGCTACTGTTAGGAAAACTCTTATTTACAAATTTAAGGATGACTTAAAAGAGGGAAAGGTTTATACATTTGAAAATATGGGAGTTGCAACTAATGGTGGAGCTTATCGCACTACTCATCACCCTTATAAATTAACTTTTCAGTTCACTTCTTTGATTCAAATGCTTGCTAACCAAAACATTGATAGATCTCCATATTCCTTTACTCCAATTGCTGATATTGTTGGAGGTTCTTATGATACTGATTTTTTAGTTGATGTGATTGGGCTCTTGACTGGTGTTGGTTCTGAAAGGGAAGTTACCAACCAAAATGGAAGTACCACAAAACTCAATGTTATTGAGTTAGAGGCTGATGGGCATAAGATCCTATGCACACTGTTTGGGGCTTATGTTGATGTACTTAATGGTTTTGTTGGAGCTGGTGATGTCCAAAATGATGTTGTCATTATGCAGCTTGCAAAAGCCAAAAAATTTCAAGACAAGATTCACATTCAGAACTGCATGAATTGTAGTGTCTTGCTATTTAACCCTGCATGTGAAGAAAGTGTTTGTCTAAGGGCAAGGCTTCCTGAATCTCAAGAAACTCCATCTCCTTTGACTTTAACTCAGCTCAATGTTGAGACTCAAGTTCAACCAATTGATGAGTTTTTGTTTAATACCCCAAGAAGTACTCTACAAGCTCTTAAAGAGGCCACCACTGAACAAGTCAATGTTGTGCTTGGAACTGTCAAAAGGGTTTTAAATCCTGATAGCTATTGGTACACTGCGTGTATATGTAACAAGGCTGTCATCCCAGATTCAAGAATGTTTTTTTGTGAAAAGTGCAATAAACATGTTGTGAGGGTTTATCCTAGGTTTTGTATCAAGGTTAGAGTGATGGATCACACAGATTCTGCAACTCTTGTCATATTTGACAAAGAAGCAAGTTTGCTTTTCAATATGACATGTGCTGATATGATTGACGCAGCACAAAGGGCTGGTGGTGCTGGAGGTTTGCCTCTTGAAATTGCTGATTTGATATGCAGAGATTCGGCCATAATCAACCAATTCAAAGCAAAGTGGGAAAAGGAAGAGGCTACTTTTATTAAAAATGTTAATGAGAATGGTTCTTTAAGTAGTTTGTTGCTTAAAGGGAAAGATGTTTTGGTTGGTGGTACAACAAATGTCTTATCTCAGGATTTTGAAACTGGATCTTCCACTCCTGTCAAAGGGAATGAACTGATTGTTGATGGAACACCTATTAAAGTTACTCAAGATTTAATGGAAAAATTTGCTTCTGCTGCTGTGAACCTTACTGATGATTCAATGCTAACTATGTCTCAAAACATGCCCCTGTCAGTGGAGAAAGTTAAATCTTCTGTTGTGGACTTAGAGGATGAGCAAGTTGCAGTTCATAAATATAACACCCCACATGAAATATCTAGAATATCGGTGGAATATTATTATTGA 1518 0.3709 MTMINTIPFSIEMVLMDADGGRIHATVRKTLIYKFKDDLKEGKVYTFENMGVATNGGAYRTTHHPYKLTFQFTSLIQMLANQNIDRSPYSFTPIADIVGGSYDTDFLVDVIGLLTGVGSEREVTNQNGSTTKLNVIELEADGHKILCTLFGAYVDVLNGFVGAGDVQNDVVIMQLAKAKKFQDKIHIQNCMNCSVLLFNPACEESVCLRARLPESQETPSPLTLTQLNVETQVQPIDEFLFNTPRSTLQALKEATTEQVNVVLGTVKRVLNPDSYWYTACICNKAVIPDSRMFFCEKCNKHVVRVYPRFCIKVRVMDHTDSATLVIFDKEASLLFNMTCADMIDAAQRAGGAGGLPLEIADLICRDSAIINQFKAKWEKEEATFIKNVNENGSLSSLLLKGKDVLVGGTTNVLSQDFETGSSTPVKGNELIVDGTPIKVTQDLMEKFASAAVNLTDDSMLTMSQNMPLSVEKVKSSVVDLEDEQVAVHKYNTPHEISRISVEYYY 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g02388 505 CDD RPA1_DBD_A_like 8 71 - -
Trre11g02388 505 SUPERFAMILY Nucleic acid-binding proteins 11 79 IPR012340 -
Trre11g02388 505 SUPERFAMILY Nucleic acid-binding proteins 89 214 IPR012340 -
Trre11g02388 505 CDD RPA1_DBD_C 246 365 IPR047192 -
Trre11g02388 505 CDD RPA1_DBD_B_like 109 204 - -
Trre11g02388 505 Gene3D - 241 393 IPR012340 -
Trre11g02388 505 Pfam Replication factor-A C terminal domain 268 346 IPR013955 -
Trre11g02388 505 Pfam Domain of unknown function DUF223 12 107 IPR003871 -
Trre11g02388 505 Gene3D - 7 81 IPR012340 -
Trre11g02388 505 Gene3D - 82 220 IPR012340 -
Trre11g02388 505 SUPERFAMILY Nucleic acid-binding proteins 247 348 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g02388 Trre-Chr11 28442417 28444971 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g02388 15 327 Core DNA Replication Machinery Family AT2G06510 22.866 7.35e-16 78.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g02388 - - tpra:123915358 601.668