Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g02343 ATGAATCAAAGTTCTAAGATGAAAGAAAAAGTCTATGACTTTTACCCTACGGACTTCAATAGTGATGAACGTGAAGTAGCTGCCATTCTTCTTCAAATGCCAAAGCTACATATAGCCCAAGTTATGGAGAAGAGAAGAAAATTGAAAATAACTCTTGGGGGAAAACCGATTTCAAAAATTGGTGAAAAAACCTATAATGACGGTAATGTTCATCCGGGGCCGCAAATTAATATTCCTGGTATTGTTACGGAAAATGTAAACAACCCTCTAGATGTACCGAGGATTCTTAGCGTACCAAATAATAATATTCCTGACGTTGCTATGGAAAATGTAATTTATGTAAACAACCCTCCTCTAGATATACCGACAATTCCTGGCGTACCGAATAATAATATTCTTCAATGTTGTAAGCCTTTTGAGAAAAAACTATCAAAGAGTGATTTGAAGGTGGATCAAAATAGATTGTTTATGGACAAGGGTCATGTGGAAAAGTATTTCATACCCTTATTGAGAAAACGTGAAGAAAAAATTGAAGATGGTATAAACGTGATTGCATATGACATGCAAGGTAGAACGTTCAACATGAAGTTCAAACTTTGGACTAAAAAATATTATGTCCTCAATGGATCTGGGTGGAAGAATTTCTTTGAAGAACATTCTTTGCAAGCAAATCAAGATCATGTTAAAGTCTGGATGTTTTGTCATTCAGAAACCGACAACATATGTTTTGCTCTTAGCGTGAGAAGAGAGTGA 753 0.3533 MNQSSKMKEKVYDFYPTDFNSDEREVAAILLQMPKLHIAQVMEKRRKLKITLGGKPISKIGEKTYNDGNVHPGPQINIPGIVTENVNNPLDVPRILSVPNNNIPDVAMENVIYVNNPPLDIPTIPGVPNNNILQCCKPFEKKLSKSDLKVDQNRLFMDKGHVEKYFIPLLRKREEKIEDGINVIAYDMQGRTFNMKFKLWTKKYYVLNGSGWKNFFEEHSLQANQDHVKVWMFCHSETDNICFALSVRRE 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g02343 250 CDD B3_DNA 139 233 IPR003340 GO:0003677
Trre11g02343 250 Gene3D - 139 250 IPR015300 -
Trre11g02343 250 PANTHER B3 DOMAIN PLANT PROTEIN-RELATED 134 248 IPR005508 GO:0003677
Trre11g02343 250 SUPERFAMILY DNA-binding pseudobarrel domain 139 240 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g02343 Trre-Chr11 27976893 27977645 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g02343 137 245 B3 DNA Binding Superfamily AT4G03170 36.697 1.22e-17 77.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g02343 - - tpra:123915381 242.276