Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g02333 ATGAAGGATCCAGAGGAGCATCAAGTCAAATCAAAGCCTCTACAAAAACTTACAGAGCATAGAAGATGGAGCAAAAAAAGAAGAAGCCAAATCAAGACAGATAAATCACAAGAAGCAGGAAATGATTCAAAACTGGTGCCCTATCCAACAACTTGCAGGAAGAGTCTTGTGTTTTCTAGCAGGCCTGGCTATGGCCAACTAGGGACAAAGTGCATCATCAAAGCCAACCATTTTCTTGTAGATATATCAATCTCTGATTTAAGCCATTACAATGTTAAAATTATACCTGAAGTCAGTTCTAGTAAAACAAGAAAGGCTGTCATATCTGAGCTTGTGAGGCTTCATAGGAACACTGATTTGGCCAAGAGGCTACCTGCTTATGATGGAGGAAGAAATCTTTACACAGCTGGTTTGCTACCTTTTACATATAAAGAATTTAGTGTAATATTGAGTGACGATGATTACGTTACCGGCGGCATTAGGGAACGAGAATTTAAGGTAGCAATCAAGTTTGCAAGTAGTGTTAAAATGCAACAACTTAAGGAACTTCTAAGTGGGAAAAAAGTAGACACACCACAAGAAGCACTTACTGTCTTTGACATTGTGTTGAAGGAAGTTGCTGCTCAAAGTTACATATCAATTGGAAGATGTCTCTATTCTCCTGATGTGAGAAAACCACAGCAACTTGGTGGTGGCATTGAATCATGGCGTGGATTTTATCAGAGTATAAGGCCAACTCAAATGGGATTATCACTTAACATTGATATGTCATCAATGGCATTTATTGAACCACTTCCTGTGATTGACTTTGTTGCTCAAATTCTTGGAAAAGAAGTGCAATCAAAACCATTGTCAGATGCAGATCGTGTCAAGGTTAAAAAGGCCCTAAGAGGTGTAAAAGTTGAAGTCACACATAGAGGAAATTTTAGAAGGAAGTACAGAATATCAGGATTGACTTTACAACCAACAAGGGAGCTTATTTTTCCTCTTGATGAGCAAATGAACATGAAATCAGTAGTCGATTATTTTCGAGAAATGTATGATTATACAATCAAATATACTCATTTACCTTGCCTTCAAGTAGGAAGTCAAAGGAAAGTCAACTATTTGCCTATGGAGGCATGTAAGATAGTTAGGGGCCAGAGATATACAAAAGGGCTGAATGAAAAGCAAATAACTTCACTGCTGAAGTCCTCATGCCAGAGACCCCGTGATCAAGAGACAGACATTTTACAGACAATTGAAAAAAACAATTACGAGAACAATCCCTATGCAAAGGAGTTTGGCATCAGCATAGACAACAAGCTTGCATCAGTGGAGGCTCGGGTTCTACCTCCTCCATGGTTGAAATATCATGATACTGGAAGAGAGAAAGAATACTTACCACAAGTTGGTCAATGGAATATGATGAACAAGAAAGTTATAAATGGAAGTACGGTAAAATATTGGGCATGCATCAATTTCTCACGAAGTGTACAAGAAAGTACAGCTCGTGGATTTTGCCAACAGTTAATTCAGATGTGTCAAATCTCAGGCATGGAATTTAGTCAGGAACCTGTCATTCCCGTATATTCAGCAAGACCGGATCAAGTCAAGAAAGCTTTGAAGTATGTACAGAAAACTGCTCTAGACAAACTTGATGGTAAAGAGCTAGAATTCTTGATTGCCATTCTTCCAGACAACAATGGCTCTTTGTACGGTGATCTCAAAAGAATCTGCGAAACGGATCTCGGTTTGATTTCTCAATGCTGCCTTGCAAAATATGTAATCAAGATTAACAGACAGTACCTGGCAAATGTTGCACTAAAAATCAATGTGAAGATGGGAGGAAGAAACACGGTACTTTTGGATGCATTAAGTTGGAAGATTCCACTGGTTAGTGATATTCCAACGATAATATTTGGAGCTGATGTAACTCATGCAGAATCCGGAGACGAAAATTGCCCATCCATTGCTGCTGTTGTAGCCTCCCAGGACTGGCCAGAAGTAACAAAGTATGCAGGGTTAGTTTGCGCTCAGCCTCACCGTGAAGAGCTCATCCAAGATCTTTTCAAATGTTGGAAAGATCCACAGATGGGTGTGGTTTATGGTGGTATGATTAGGGAGCTTTTACTCTCATTTAAGAAGGCAACTGGACAAAAACCGTTGAGAATAATTTTTTATAGGGACGGGGTAAGTGATGGACAATTCTACCAAGTTTTGCTGTATGAACTTGACGCAATCCGTAAGGCGTGTGCGTCTTTGGAACCAAGTTACCAACCTCCAGTAACATTTGTTGTGGTTCAAAAACGGAATCACACTAGACTCTTCCCAAACAATCATGACGACAAAACCAGCACTGATATGAGTGGGAATATCTTACCTGGTACTGTGGTGGATTCAAATATCTGTCATCCTACTGAATTCGATTTCTATTTATGCAGTCATGCAGGAATTCAGGGTACAAGTAGACCGGCCCACTATCATGTCCTCTGGGATGAGAACAATTTCAGTGCAGATGAGATTCAGTCTCTAACTAACAACTTATGTTACACCTATGCAAGATGTACGCGGTCTGTTTCTGTAGTACCTCCAGCATACTATGCTCATCTGGCAGCCTACAGAGCTCGATGCTACATGGAACCGGATCATCCAGAGATCGCTAAACTCCGAGGTACAAGATCAAAAGATAGGTCTGTTAAGCCACTTCCTGCATTGAAAGAGAACGTGAAGAAAGTAATGTTTTATTGCTGA 2733 0.4003 MKDPEEHQVKSKPLQKLTEHRRWSKKRRSQIKTDKSQEAGNDSKLVPYPTTCRKSLVFSSRPGYGQLGTKCIIKANHFLVDISISDLSHYNVKIIPEVSSSKTRKAVISELVRLHRNTDLAKRLPAYDGGRNLYTAGLLPFTYKEFSVILSDDDYVTGGIREREFKVAIKFASSVKMQQLKELLSGKKVDTPQEALTVFDIVLKEVAAQSYISIGRCLYSPDVRKPQQLGGGIESWRGFYQSIRPTQMGLSLNIDMSSMAFIEPLPVIDFVAQILGKEVQSKPLSDADRVKVKKALRGVKVEVTHRGNFRRKYRISGLTLQPTRELIFPLDEQMNMKSVVDYFREMYDYTIKYTHLPCLQVGSQRKVNYLPMEACKIVRGQRYTKGLNEKQITSLLKSSCQRPRDQETDILQTIEKNNYENNPYAKEFGISIDNKLASVEARVLPPPWLKYHDTGREKEYLPQVGQWNMMNKKVINGSTVKYWACINFSRSVQESTARGFCQQLIQMCQISGMEFSQEPVIPVYSARPDQVKKALKYVQKTALDKLDGKELEFLIAILPDNNGSLYGDLKRICETDLGLISQCCLAKYVIKINRQYLANVALKINVKMGGRNTVLLDALSWKIPLVSDIPTIIFGADVTHAESGDENCPSIAAVVASQDWPEVTKYAGLVCAQPHREELIQDLFKCWKDPQMGVVYGGMIRELLLSFKKATGQKPLRIIFYRDGVSDGQFYQVLLYELDAIRKACASLEPSYQPPVTFVVVQKRNHTRLFPNNHDDKTSTDMSGNILPGTVVDSNICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFSADEIQSLTNNLCYTYARCTRSVSVVPPAYYAHLAAYRARCYMEPDHPEIAKLRGTRSKDRSVKPLPALKENVKKVMFYC 910
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g02333 910 ProSiteProfiles PAZ domain profile. 265 379 IPR003100 GO:0005515
Trre11g02333 910 FunFam Protein argonaute-2 258 384 - -
Trre11g02333 910 Pfam Argonaute linker 2 domain 408 451 IPR032472 -
Trre11g02333 910 Pfam Mid domain of argonaute 462 540 IPR032473 -
Trre11g02333 910 CDD PAZ_argonaute_like 264 378 - -
Trre11g02333 910 Gene3D - 443 616 - -
Trre11g02333 910 ProSiteProfiles Piwi domain profile. 553 874 IPR003165 GO:0003676
Trre11g02333 910 CDD Piwi_ago-like 423 873 IPR045246 -
Trre11g02333 910 Gene3D paz domain 259 383 - -
Trre11g02333 910 MobiDBLite consensus disorder prediction 1 46 - -
Trre11g02333 910 SMART PAZ_2_a_3 269 401 IPR003100 GO:0005515
Trre11g02333 910 SUPERFAMILY PAZ domain 260 419 IPR036085 GO:0005515
Trre11g02333 910 SMART DUF1785_2 212 264 IPR014811 -
Trre11g02333 910 FunFam protein argonaute 10-like 622 910 - -
Trre11g02333 910 SMART Piwi_a_2 553 874 IPR003165 GO:0003676
Trre11g02333 910 Pfam Piwi domain 554 873 IPR003165 GO:0003676
Trre11g02333 910 Pfam Argonaute linker 1 domain 213 262 IPR014811 -
Trre11g02333 910 Pfam PAZ domain 269 395 IPR003100 GO:0005515
Trre11g02333 910 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 51 875 - -
Trre11g02333 910 MobiDBLite consensus disorder prediction 1 18 - -
Trre11g02333 910 Gene3D - 622 910 IPR036397 GO:0003676
Trre11g02333 910 Pfam N-terminal domain of argonaute 70 203 IPR032474 -
Trre11g02333 910 FunFam Argonaute 10 443 616 - -
Trre11g02333 910 SUPERFAMILY Ribonuclease H-like 542 875 IPR012337 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g02333 Trre-Chr11 27763355 27770454 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g02333 53 910 Eukaryotic Initiation Factors Gene Family AT5G43810 73.095 0.0 1367
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g02333 K11593 - gmx:100810235 1581.23