Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g02305 ATGGATTCATGGAGTTTTGTTCCTGAAGATAATAATAATAAAGGGTATGTTTCTAAAGGTTCAATCTTGGGTTGGGAACTTAAAACCCCATCTAGTTTTTTAGGTCAACAAAACATTGAAAATGACAATAATCAATGTTTTGAGGAATTGGGTTTTCATGGTATGTTGGGAAAACAATTGTCTAATGTTGTTGTTGTTGATGATGTTGTTGATGATGTTGTTAATGATGATGTTGTTGTTGATGATGTTCATAGAAGAAACATGGATAATGATGTTGTTATGGCTGCACCAAGAATAGAACTTTCAAACACATTAGGATGTAATTCACTCATTGATTTAAAGCTTGGTAGGTTTGGTGATCATAAAGATGCAATTGGAAATGCATTTTCAAAAGGGACGGCGATTTTATCGTCGTCTGGTTCATCGTCTACGCCGCCTAAGAGAGTGCGGTCTTCGAGCATTCATTCTCAAATTGCTTATTGCCAAGTCTATGGTTGTAATAAGGATCTGAGTGGTTGTAAAGATTATCACAAGAGACATAAAGTTTGTGAGATTCATTCAAAGACTTCTAAAGTTATAGTCAATGGTATTGAACAAAGATTTTGTCAACAATGTAGTAGGTTTCATTTGCTGGCTGAATTTGATGATGGTAAGCGTAGCTGTCGTAAACGCCTTGCAGGCCATAATGAACGCCGCAGAAAGCCACAAGTCGGTATTCACTCGGGAAGAGCTGGGAGATTGCTTCAGTCATATAGCGATAGCAGATTCCAGGGAAGCATGCTAACATCAGCATCTTTTATATGCCAAGATATACTCCCCAGTGAGGTTTTGTCTTCTGAGAAATGTGGAACTAGTAACTGGTGGAGGCCTATAAAAGGCGAAGACGGAACTGGAACCGGTTTTCGGCCTCTTTCTTCTATTCCAATTACCAATGCACATCCTCATTCCCGAACTCTATTTCCTTCGTACAGTGATAAACAATTTCCGTTCCTTCATGAAAACGGAGCTGCATCTGCTACAGGAAGCATGTTCTGCGAAAACAATACTCAATATCCTCCTATCCTCGGAGGCTCGACTTCCGGATCACAATCATTATTCCAAGATACTTCCTTAGGAAGCGAGGACTTTAACGTTTTCGAAACGGAATCAACTGTTCAAGGATTATCGGGAGTTTCAGACGGTGGTTGTGCTCTCTCTCTTCTGTCATCTCAATCCCAGAACTCTTCAAGCCAATCATCAGTAATCCCTTTGTCTCGTTCTTTGGTCATTCCAAGCTGCCATTACAGCATAAGTGGAGTGTCGGATAGGTTTCCGTCTGAGTTAAATCCTACAGATGGAAGTCATCTTAGTCCTATATTGATATCCGACAATAATGAAATCGTACATTTCGAAATGGCAGATGAGATTTTCCAAGGGTCTGATTTTGTCAATGTGAAAGATCGTCTTTCTTGTGAAGATGGCACGACCATTGACTTGCTTCAATTGTCAACACAACTTCAGCGCGTCGAACATCAGAGACGAGCCTTGCAGGTTAAGCAAGAAAACGATTCTTCTTTCTCTCTTCGGATTACTTAA 1575 0.4 MDSWSFVPEDNNNKGYVSKGSILGWELKTPSSFLGQQNIENDNNQCFEELGFHGMLGKQLSNVVVVDDVVDDVVNDDVVVDDVHRRNMDNDVVMAAPRIELSNTLGCNSLIDLKLGRFGDHKDAIGNAFSKGTAILSSSGSSSTPPKRVRSSSIHSQIAYCQVYGCNKDLSGCKDYHKRHKVCEIHSKTSKVIVNGIEQRFCQQCSRFHLLAEFDDGKRSCRKRLAGHNERRRKPQVGIHSGRAGRLLQSYSDSRFQGSMLTSASFICQDILPSEVLSSEKCGTSNWWRPIKGEDGTGTGFRPLSSIPITNAHPHSRTLFPSYSDKQFPFLHENGAASATGSMFCENNTQYPPILGGSTSGSQSLFQDTSLGSEDFNVFETESTVQGLSGVSDGGCALSLLSSQSQNSSSQSSVIPLSRSLVIPSCHYSISGVSDRFPSELNPTDGSHLSPILISDNNEIVHFEMADEIFQGSDFVNVKDRLSCEDGTTIDLLQLSTQLQRVEHQRRALQVKQENDSSFSLRIT 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g02305 524 Gene3D - 152 222 IPR036893 GO:0003677|GO:0005634
Trre11g02305 524 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 43 506 IPR044817 GO:0003677
Trre11g02305 524 FunFam Squamosa promoter-binding-like protein 14 152 222 - -
Trre11g02305 524 SUPERFAMILY SBT domain 159 239 IPR036893 GO:0003677|GO:0005634
Trre11g02305 524 ProSiteProfiles Zinc finger SBP-type profile. 158 235 IPR004333 GO:0003677
Trre11g02305 524 Pfam SBP domain 161 234 IPR004333 GO:0003677
Trre11g02305 524 Coils Coil 492 512 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g02305 Trre-Chr11 27476629 27479814 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g02305 111 514 SBP-box Gene Family AT1G69170 35.135 1.10e-50 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Trre11g02305 SBP 5.9e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g02305 - - gmx:100777766 679.863