Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g02300 ATGGAGTCTATTATAGTTTTAGTCTTGTTACTCTTCTCTTGCTCCACATTCACTTCCACAGAAGCCTATGATCCGTTAGATCCAACCGGAAATATAACACTCAAATGGGATGTCATGAGTTGGACTGCAGATGGCTATGTTGCTATTGTTACAATGTACAACTTTCAACAATATCGACATATTCAAGAGCCAGGATGGACACTAGGGTGGACATGGGCTAAAAAGGAAGTAATTTGGAACATGATGGGAAGCCAAACAACCGAACAAGGAGATTGTTCGAAATTCAAAGCTGGAACTCCACATTGTTGTAAGAAAGATCCAACCGTAGTTGATATGTTGCCAGGAACTCCTTACAACCAACAAATTGCAAATTGTTGCAAAGGTGGAGTCTTGAATTCATGGGCTCAAGATCCAAGCAATGCAGTAAGTTCTTTTCAACTTAGTGTTGGTTCTGCCGGAACAACGAATAAAACAGTAAAACTTCCAAGGAATTTCACACTTAGAGCTCCTGGTCCTGGTTATACTTGTGGTCCTGCGAAAATTGTTAGACCAACTCAATTTATTACGAGTGATAAGAGGAGAGTGACACAAGCCTTGATGACTTGGAACATTACCTGTACTTATTCTCAATTCTTGGCGCAAAAGACACCAACTTGTTGTGTTTCACTCTCATCCTTCTATAATGACACGGTAGTAAACTGCCCAACCTGCACATGTGGCTGCCAAAACAAAACACAACCTGACAGTTGTGTAGATCGAGACTCTCCACATTTATCTTCAATAGTATCATCATCTGGAAAACCTGCAAATACACCTCTAGTCCAATGTACAAGTCACATGTGTCCGATACGAGTGCATTGGCACGTGAAGCTGAATTATAAAGAGTATTGGAGGATCAAGATCACAATCACAAATTTTAATTACAGAATGAACTACTCACAATGGAATCTTGTGGTGCAACATCCCAATTTTGATAATCTTACTCAGCTTTTCAGCTTTAAGTACAAGTCACTAAATCCCTATGAAGGCTTAAACGATACAGGTATGTTGTGGGGAGTAAAGTTCTACAACGATTTTCTTTCATCGGCTGGATCATTAGGAAATGTTCAATCTGAAATCTTATTTAGAAAAGATAAATCAACTTTCACATTTGATAAGGGATGGGCCTTTCCAAGAAGAATTTATTTCAATGGTGATAACTGTGTTATGCCTCCGCCAGATGCATACCCTTGGTCACCAAATGCATCTTCGCAACTTGTTTTTTCTTTACTTAGTACACTCGTAGCCGCTTTAGCTTCTTTATTAATCATATTGAATTGA 1320 0.3902 MESIIVLVLLLFSCSTFTSTEAYDPLDPTGNITLKWDVMSWTADGYVAIVTMYNFQQYRHIQEPGWTLGWTWAKKEVIWNMMGSQTTEQGDCSKFKAGTPHCCKKDPTVVDMLPGTPYNQQIANCCKGGVLNSWAQDPSNAVSSFQLSVGSAGTTNKTVKLPRNFTLRAPGPGYTCGPAKIVRPTQFITSDKRRVTQALMTWNITCTYSQFLAQKTPTCCVSLSSFYNDTVVNCPTCTCGCQNKTQPDSCVDRDSPHLSSIVSSSGKPANTPLVQCTSHMCPIRVHWHVKLNYKEYWRIKITITNFNYRMNYSQWNLVVQHPNFDNLTQLFSFKYKSLNPYEGLNDTGMLWGVKFYNDFLSSAGSLGNVQSEILFRKDKSTFTFDKGWAFPRRIYFNGDNCVMPPPDAYPWSPNASSQLVFSLLSTLVAALASLLIILN 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g02300 439 Pfam COBRA-like protein 46 209 IPR006918 GO:0010215|GO:0016020
Trre11g02300 439 PANTHER PROTEIN COBRA 11 428 IPR006918 GO:0010215|GO:0016020
Trre11g02300 439 PIRSF COBRA 1 439 IPR006918 GO:0010215|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g02300 Trre-Chr11 27409975 27413243 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g02300 6 438 COBRA Gene Family AT3G02210 72.811 0.0 701
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g02300 - - gmx:100815779 822.002
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g02300 11 27409975 27413243 Trre11g02300 11 27409975 27413243 ECH