Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g02297 ATGAAATTTATAAGAAGAAACGTGTTTTTTCACCTAAACACTTATTCAACTCATTTCAGCACTATTTCTCATTACAGAAAACAAATTTCACTCGCTAATCTATTTCAAACCTATGGTTTCCCTTCTTCAACCCTTTTCAATTTCCTCTCCAAAAATCACTTCCTCTTCAATTCCGATCCAACCGAGCTTCACAAATCGTTAACAACCCTCTTTTCCTTCCGAATTCCGCAGAAAACCTTAATTTCCCTTGTTCATGATTGTCCTTCTGTGTTGGAACCTCAATTTCTACATAATTGGGAATTAGGTTTTCCTCAATTGAAATCCAAAGTTTGTAATCCTTCCCCGTTGATGATTGCGAATTTGTTGCGATGTTCTAGACGGTTCCATTTAAATCCCCTTGAAATTTCCGAAAAAGTTGAGGTTTTTAGGGGTTTAGGGTTTTCTGAGGATGTTGTGGTTAGGGTTTTGGAAGAATTTCCCAGTGCGGTTGTAATGAGCGAAAGTGAAATTATTGCTGTGATTGATTTTCTTGTGGAATTTGGTGTTTCTAGAGATGAAATTGATAGAGTTGTTAGATTGTATCCTAGGGTTTTGGGATTTGGAGTTGAAAATAGGTTGAAGCCGTTGATACATGAGTTGAGGGGTTTGGGGTTTTTGCGACGCGAAGTTAGGGCGGAGGTTGTTAGGGATCCAAGGATTCTGGGAATGGAAATTGGGGAATTTTCGCGGTGTTTGAAGTTGTTGCAGAGTTTGAAATGCAGGGAGGCAATTAAAGAGAAGATTTTCGGAGATGGTCTGGTTAGGGCTTGTTTTGAAGTGAAGCTGAGGGTCGATTGTTTATGCAGTCACGGTTTGATTCGTAGGGATGCTTTGAAGGTATTGTGGAAGGAACCGAGGTTGATGACTTATGATTTGGAGGATATTGAGAAGAAGATCGAGTTTTTAGTTCATAGGATGAAATATGGTATTGATTGTTTGCATGAAGTTCCTGAATACTTGGGTGTGAATTTTGAAAAGCAGATTGTTCCTAGATACAATGTGATCGAATATTTGAATGGAAAGGGTGCAATTGGGTTTGAAGTTGGATTGAAGGACCTTATCAAACCAACTAGGCTTAGATTTTATAATCTTTATGTCAAGCCTTACCCTGAATGCGAAAAAATATATGGCAGATTTTCATGTAAGGTTGAAATTAAAATCAAGCATCCAGCTGGACTTTGGAAGCTGTTCAAACCACAAAAGTTTACTCAAACCGATAAAGATGCGAAGAACATTCAGGCTTTCATGGATTCATAG 1296 0.3827 MKFIRRNVFFHLNTYSTHFSTISHYRKQISLANLFQTYGFPSSTLFNFLSKNHFLFNSDPTELHKSLTTLFSFRIPQKTLISLVHDCPSVLEPQFLHNWELGFPQLKSKVCNPSPLMIANLLRCSRRFHLNPLEISEKVEVFRGLGFSEDVVVRVLEEFPSAVVMSESEIIAVIDFLVEFGVSRDEIDRVVRLYPRVLGFGVENRLKPLIHELRGLGFLRREVRAEVVRDPRILGMEIGEFSRCLKLLQSLKCREAIKEKIFGDGLVRACFEVKLRVDCLCSHGLIRRDALKVLWKEPRLMTYDLEDIEKKIEFLVHRMKYGIDCLHEVPEYLGVNFEKQIVPRYNVIEYLNGKGAIGFEVGLKDLIKPTRLRFYNLYVKPYPECEKIYGRFSCKVEIKIKHPAGLWKLFKPQKFTQTDKDAKNIQAFMDS 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g02297 431 Gene3D Transcription termination factor 3, mitochondrial 165 392 IPR038538 -
Trre11g02297 431 FunFam Transcription termination factor MTERF15 mitochondrial 167 389 - -
Trre11g02297 431 PANTHER CGI-12 PROTEIN-RELATED 70 382 IPR003690 GO:0003690|GO:0006355
Trre11g02297 431 SMART mt_12 224 254 IPR003690 GO:0003690|GO:0006355
Trre11g02297 431 SMART mt_12 291 322 IPR003690 GO:0003690|GO:0006355
Trre11g02297 431 SMART mt_12 118 148 IPR003690 GO:0003690|GO:0006355
Trre11g02297 431 SMART mt_12 323 354 IPR003690 GO:0003690|GO:0006355
Trre11g02297 431 SMART mt_12 153 183 IPR003690 GO:0003690|GO:0006355
Trre11g02297 431 SMART mt_12 188 219 IPR003690 GO:0003690|GO:0006355
Trre11g02297 431 Pfam mTERF 276 369 IPR003690 GO:0003690|GO:0006355
Trre11g02297 431 Pfam mTERF 130 244 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g02297 Trre-Chr11 27388909 27390204 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Trre11g02297 mTERF 1.7e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g02297 - - pcin:129319850 572.007