Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g02285 ATGGAAAACCACCAAAACCAAACCAAAAACCCAGAGCAAGACCTAGACAACAAACAACAACACCAGGAGGGTTGGGGCACGTGGGAAGAACTTTTACTAGCGTGCGCCGTCAACCGCCATGGCTTCAAAGACTGGGACACCGTCGCCATGGAGGTTCAGTCCCGAACCAACCGCCCTACGCTCCTCGCCACCGCACACCACTGCGAACAAAAGTTTCACGATCTAAATCGTCGATTCACCGATGACGTTACTCCGCCGCAACAGAATGGAGACTCCGCTGACGTTGATTCCGATCATGTTCCCTGGCTTGAGAAATTGCGTAAACAACGCGTTGTGGAGCTCCGGCGTGATGTCCAACGCAGCGATGCATCCATTTTGTCGTTGCAGTTGCAGGTAAAGAAGTTAGAGGAAGAGAAAACGAAAGAAAACGACGGAGAAGAAGATAAGAAACCAGATCTGACGGTTACCGGCGAGGAACAGCAGCCAGAAAATGAAAAAACCGGTGGAGAAATGGAGGAGGCTGAACCGGTTAATTCCGAACCGGATATACGACGGCTCGATGAAAGCACAACTAATACTGATAAACTGTTACCAACAACTGGAGAGGAATCGGACCGGGATAATCAATCGGTTAATGAGTCGAACTCAACCGGTTCGAGGTTCGATTTAGCGAAAACCGGTGATCTTGATGTAAAGTTAGGTACCGGTCCGGTTCATGTTAAATCCGGTCCAAACGAGCCGGTTCAAACCGGGAGGAAGAAAAAATCTATTGAGGAAGAATCGAATAACGGAAGCTATGATAACGAGGCTAAAGTTTTAACGTGCGAGTCGGTGCCTCCGAGTGAGGAGAGGAAGGTGGAAGGTGATTCATCCGAGTTACATGACTCGGTGACTCGCTCGGAGGAGACAGGGACGAGAGAGAGTAGCGAAGTGCAGAGTTCTTCGAGTTTGTCGAAAATGAGGAGGACACGGCGGAGGAAGGATGTTTCCGGTGGAGATGGAGATGTGACGCCGGGGAATGAGGACATGGCGATGGTGAAATCAGAACCGTTGGTTGGCGTGTTGGAGATGATCGAAAGACATGAAAAATTTCCATTGTTTGAACGGCGTCTTGAAAAAAACCAGGATTTGGATAGATACAAAGACATTGTGAGACAGCACGTGGACCTGGAAACCATACAATTGAGACTCCAAAAAGGTCACTATTCCTCATGCACTAGCTCATTCTTCCGCGACCTCCTCCTCCTCTTCACCAATGCCGCTGTGTTCTTCCCTCGCGATTCATCTGAATCGCGGGCGGCGCATCAGCTTGAACACCTTGTTATTGCTGAGATGAAAAGCTCCAGCCAAACACAATCCGACCCTATCACCCAGAAGACCGATTCACTCCCTCCTAAAGCTGCTCCTATATTAGTTTGCCGTAAACGCAGTGGAATCTCAACTAAGCCTTCCGCAACCACCTTGAGTCAAAAGGGTGATCACCAACCCATCATCAATGTCAAAAAGGAAAGGCAATCTTCTGATGCAAAACCAACCTTGAAAGCAAGTAATTCTGAGACAGATGATGAGGAGCCTCCTTTGGCTAGAGAAAAGCCTGTAACTGGAGCTAGAAGCAGAAGAAGCAACAAGAACCTCAACAGCAATGCTGACAACAAGAAACTACCCTCTAACTCAACTTCTAAAACAGTTTCCTCGGCAACCAAGCCTGCTGAGACCCCAAAATTAGAGAAGAACAAAGCAGAAGGGGTGCCCGACAAGAAGAAGAATGCTGCTGCCGATTTCTTGAAGAGAATAAAGCGAAATGCCTCTGTGGAGGTGCTGAGAAGTAGTGGTGGTGGAGGAGGTAGTAGTGGTAGCAGTAAGGGCGGTGGAGGTAGTGCTAATAGGAAAGAGCAGAAGAAAGTAGCGAATAATGGAAAGGGTGAGAAAGGGAAAGAAAGAGCTTCAAGGTATAACGATGGAGGAGGGTCTGGGGATAAGAGGAATAAGAATATTGATAACTCTAGGAGGAATGTTGGAAGACCTCCAAAGAAAGGAGCAGAGACCAATGTAGTTAGTACAAAGCGTGGAAGGGAAAGTAGCGCAAGTGGTAGCAAAGATAAGCGTCCGAAAAAACGTTCAAAGAAATGA 2130 0.4789 MENHQNQTKNPEQDLDNKQQHQEGWGTWEELLLACAVNRHGFKDWDTVAMEVQSRTNRPTLLATAHHCEQKFHDLNRRFTDDVTPPQQNGDSADVDSDHVPWLEKLRKQRVVELRRDVQRSDASILSLQLQVKKLEEEKTKENDGEEDKKPDLTVTGEEQQPENEKTGGEMEEAEPVNSEPDIRRLDESTTNTDKLLPTTGEESDRDNQSVNESNSTGSRFDLAKTGDLDVKLGTGPVHVKSGPNEPVQTGRKKKSIEEESNNGSYDNEAKVLTCESVPPSEERKVEGDSSELHDSVTRSEETGTRESSEVQSSSSLSKMRRTRRRKDVSGGDGDVTPGNEDMAMVKSEPLVGVLEMIERHEKFPLFERRLEKNQDLDRYKDIVRQHVDLETIQLRLQKGHYSSCTSSFFRDLLLLFTNAAVFFPRDSSESRAAHQLEHLVIAEMKSSSQTQSDPITQKTDSLPPKAAPILVCRKRSGISTKPSATTLSQKGDHQPIINVKKERQSSDAKPTLKASNSETDDEEPPLAREKPVTGARSRRSNKNLNSNADNKKLPSNSTSKTVSSATKPAETPKLEKNKAEGVPDKKKNAAADFLKRIKRNASVEVLRSSGGGGGSSGSSKGGGGSANRKEQKKVANNGKGEKGKERASRYNDGGGSGDKRNKNIDNSRRNVGRPPKKGAETNVVSTKRGRESSASGSKDKRPKKRSKK 709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g02285 709 MobiDBLite consensus disorder prediction 572 603 - -
Trre11g02285 709 MobiDBLite consensus disorder prediction 445 460 - -
Trre11g02285 709 MobiDBLite consensus disorder prediction 137 343 - -
Trre11g02285 709 MobiDBLite consensus disorder prediction 137 156 - -
Trre11g02285 709 Pfam Bromodomain 357 434 IPR001487 GO:0005515
Trre11g02285 709 MobiDBLite consensus disorder prediction 1 19 - -
Trre11g02285 709 PANTHER DNA-BINDING BROMODOMAIN-CONTAINING PROTEIN 11 709 - -
Trre11g02285 709 MobiDBLite consensus disorder prediction 163 191 - -
Trre11g02285 709 MobiDBLite consensus disorder prediction 610 626 - -
Trre11g02285 709 MobiDBLite consensus disorder prediction 633 676 - -
Trre11g02285 709 Coils Coil 118 145 - -
Trre11g02285 709 ProSiteProfiles Bromodomain profile. 359 431 IPR001487 GO:0005515
Trre11g02285 709 MobiDBLite consensus disorder prediction 278 306 - -
Trre11g02285 709 MobiDBLite consensus disorder prediction 251 265 - -
Trre11g02285 709 CDD Bromodomain 354 445 - -
Trre11g02285 709 MobiDBLite consensus disorder prediction 496 537 - -
Trre11g02285 709 Pfam Myb-like DNA-binding domain 25 56 IPR001005 -
Trre11g02285 709 CDD SANT 25 56 IPR001005 -
Trre11g02285 709 Gene3D - 15 74 - -
Trre11g02285 709 SMART bromo_6 340 450 IPR001487 GO:0005515
Trre11g02285 709 MobiDBLite consensus disorder prediction 538 571 - -
Trre11g02285 709 Gene3D - 340 456 IPR036427 GO:0005515
Trre11g02285 709 SUPERFAMILY Bromodomain 350 447 IPR036427 GO:0005515
Trre11g02285 709 SMART sant 21 78 IPR001005 -
Trre11g02285 709 MobiDBLite consensus disorder prediction 1 21 - -
Trre11g02285 709 MobiDBLite consensus disorder prediction 479 494 - -
Trre11g02285 709 MobiDBLite consensus disorder prediction 445 709 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g02285 Trre-Chr11 27274425 27282074 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Trre11g02285 Bromodomain 1.2e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g02285 - - adu:107458545 837.795