Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g02262 ATGGAGTTCCTGATTAAACTCATTACTTTTCTTCTCTTCTTAATGCCTACAATCACTTGCTCACAATATTTAGGAAACAACCTATTCACTAATCGAAAAATATTTTCAAAACAAGAAACAATTTCCTCTTACGCTGTCGTTTTTGACGCCGGTAGCACTGGTAGCCGTATCCATGTCTACCATTTTGATCAGAACTTAGATCTTCTTCATATTGGCAAAGCTGTTGAGTTTTTTAATAAGACAACACCTGGTTTGAGTGCATACGAAAAGAATCCGGAAGAAGCTGCAAAATCATTGATTCCACTTTTAGAGCAAGCAGAAAGTGTGGTTCCTAAGGATCTTCATCGCAAGACACCAGTTAGACTTGGGGCAACTGCAGGTTTAAGGCTTTTGAATGGGGATGCTTCTGAAAAGATATTGCAAGCGGTAAGGGATATGCTCAACAGTAGAAGTACCTTCAACGTTCAACCTGATGCAGTTTCTATTATTGATGGAACCCAAGAAGGTTCTTATCTATGGGTGACAGTAAACTATGTATTGGGGAATTTGGGAAAAAGGTACACAAAAACTGTGGGAGTAATGGATCTTGGAGGTGGATCGGTTCAAATGGCATATGCAGTGTCAAAGAAAACAGCAAAAAATGCTCCAAAAGTTGCAGATGGAGATGATCCATACATTAAGAAAATTGTACTCAAGGGAAAACCATATGATCTCTATGTTCACAGTTACTTACGCTTTGGTAGAGAAGCATCTCGAGCAGAGATTTTGAAGGTCACACATGATTCCGCTAGCCCTTGCATTTTAGCTGGATTTGATGGAATCTACACATATTCAGGAGAAGAGTTTAAGGCCAGTGCCCCTGCTTCTGGAGCCAACTTTGATAAATGTAAAAAGATAATTCAAAAGGCTCTTGAATTGAATTATCCATGTCCTTATCAAAATTGCAGTTTTGGTGGAATATGGAATGGTGGAGGGGGAAGTGGACAGAAGAAACTTTTTGCTGCTTCATCTTTCTTTTACCTACCTCAAGATGTTGGTATGGTTGATCCAAATAAATCTAATTTAAAACTTCGTCCAGTGGATCTTGAGATTAAAGCTAAAATAGCTTGTACATTAAATGTTGAGGATGCAAAATCAGCTTACCCACTTCTTGAGAAGTTCAATATAGTTCCATATGTATGCATGGATCTTATATATCAGTATGAGTTGCTTGTTGATGGATTTGGCCTAGATCCATTGCAAGAGATTACAACAGGGGAGAAAATTGAATATCAAGATGCTTTTGTGGAAGCTGCATGGCCTCTGGGCATTGCAATAGAAGCCATATCATCTTTACCTAAATTTGAAAGAATGATGTATTTTGTGTAA 1368 0.3816 MEFLIKLITFLLFLMPTITCSQYLGNNLFTNRKIFSKQETISSYAVVFDAGSTGSRIHVYHFDQNLDLLHIGKAVEFFNKTTPGLSAYEKNPEEAAKSLIPLLEQAESVVPKDLHRKTPVRLGATAGLRLLNGDASEKILQAVRDMLNSRSTFNVQPDAVSIIDGTQEGSYLWVTVNYVLGNLGKRYTKTVGVMDLGGGSVQMAYAVSKKTAKNAPKVADGDDPYIKKIVLKGKPYDLYVHSYLRFGREASRAEILKVTHDSASPCILAGFDGIYTYSGEEFKASAPASGANFDKCKKIIQKALELNYPCPYQNCSFGGIWNGGGGSGQKKLFAASSFFYLPQDVGMVDPNKSNLKLRPVDLEIKAKIACTLNVEDAKSAYPLLEKFNIVPYVCMDLIYQYELLVDGFGLDPLQEITTGEKIEYQDAFVEAAWPLGIAIEAISSLPKFERMMYFV 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g02262 455 Pfam GDA1/CD39 (nucleoside phosphatase) family 40 446 IPR000407 GO:0016787
Trre11g02262 455 PANTHER ADENOSINE/GUANOSINE DIPHOSPHATASE 8 445 IPR000407 GO:0016787
Trre11g02262 455 FunFam Ectonucleoside triphosphate diphosphohydrolase 5 44 173 - -
Trre11g02262 455 FunFam Apyrase 1 164 423 - -
Trre11g02262 455 Gene3D - 44 439 - -
Trre11g02262 455 Gene3D Exopolyphosphatase. Domain 2 164 423 - -
Trre11g02262 455 CDD NBD_sugar-kinase_HSP70_actin 46 233 - -
Trre11g02262 455 ProSitePatterns GDA1/CD39 family of nucleoside phosphatases signature. 163 178 IPR000407 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g02262 Trre-Chr11 26934086 26941494 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g02262 15 444 Calmodulin-binding Proteins AT3G04080 53.364 2.45e-155 447
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g02262 K14641 - ag:CAA83655 743.421