Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g02250 ATGGAGCTTGGTTTAAGCTTAGGAGACTCTTCAAAGCCTCTAATTGGGTTAATGGAAAAACATCCTCATGAATCTTCCAAAGAACTTGGTTTAGGCTTCAACACCACTTTATCAATTGGTCCAATCAACACTACACAAAGAGATCAACTTCAACAAAAAGAAGAAGATGAAAAGACTAAAAGGGACATCATGAACAACAGAACTGAAAATCCAAACTCTGTGTTGCATCAGCTTGATCTTCTTCCTCAACTCTCATTACCATGGCATCCTCCTTCTCAAAATGTTGGTAGATTATTATCAACTGAGTTTGGTGGTTCTTCAAGGTACTTGGATGTGAACGTGGTTCCACCGGCGACAGCGGTTGTTATAGCGGACGATGAGGCGGTGCTTTCTTCGTCGCCTAATAGCGCAGCATCTTCTTTTCCAATGGATCTCTGTATATACAATCGAGGAGGAAGTGGTGGCGGTGGTGGTGGAAGTTTGAGTGGATCAGGAGGGAACAAAAGAGAGTTTTCTGATGGTGAAGGTTATGATCAAAGAAACTCTTCAAGAGTTAGTGATGAAGATGATAACTGTGGTGGTGGAAACACAAGGAAGAAGCTTAGGCTCTCCAAGGATCAATCTGCTTTTCTTGAAGAGAGTTTCAAAGAACACCACACTCTTAATCCTAAACAAAAACTGGCTCTTGCAAAACAACTCAATCTTCGACCTCGCCAAGTAGAAGTCTGGTTCCAAAACAGAAGAGCAAGGACTAAGTTGAAGCAAACAGAAGTAGATTGCGAATATTTAAAGAATTGTTGTGAGACACTAACAGAAGAGAATAGAAGACTACACAAGGAACTTTTAGAATTAAGAGCTTTAAAAACTTCAAATCCCTTTCAAATGCAATTACCAGCAACTACTTTAACTATGTGTCCTTCATGTGAACGTGTAGCAACTAATTCTACAGCAACTTCTTCTGTCACTACAAATACCACAATCAATGCTAATAACAAAACAAGTGATGATTCCACTTCAAAGGTCAATATTGGATTCCCTTTTGGAAAACCAAGGTTTCAAACACAACATCATGAGTTGAATTGA 1083 0.3943 MELGLSLGDSSKPLIGLMEKHPHESSKELGLGFNTTLSIGPINTTQRDQLQQKEEDEKTKRDIMNNRTENPNSVLHQLDLLPQLSLPWHPPSQNVGRLLSTEFGGSSRYLDVNVVPPATAVVIADDEAVLSSSPNSAASSFPMDLCIYNRGGSGGGGGGSLSGSGGNKREFSDGEGYDQRNSSRVSDEDDNCGGGNTRKKLRLSKDQSAFLEESFKEHHTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKNCCETLTEENRRLHKELLELRALKTSNPFQMQLPATTLTMCPSCERVATNSTATSSVTTNTTINANNKTSDDSTSKVNIGFPFGKPRFQTQHHELN 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g02250 360 SMART halz 254 297 IPR003106 GO:0006355|GO:0043565
Trre11g02250 360 SUPERFAMILY Homeodomain-like 186 255 IPR009057 -
Trre11g02250 360 MobiDBLite consensus disorder prediction 49 65 - -
Trre11g02250 360 Pfam Homeobox associated leucine zipper 254 288 IPR003106 GO:0006355|GO:0043565
Trre11g02250 360 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 53 332 - -
Trre11g02250 360 Pfam Homeodomain 198 252 IPR001356 GO:0003677
Trre11g02250 360 Pfam HD-ZIP protein N terminus 28 140 IPR006712 GO:0005634
Trre11g02250 360 Coils Coil 267 287 - -
Trre11g02250 360 Gene3D - 202 252 - -
Trre11g02250 360 MobiDBLite consensus disorder prediction 156 199 - -
Trre11g02250 360 ProSiteProfiles 'Homeobox' domain profile. 194 254 IPR001356 GO:0003677
Trre11g02250 360 MobiDBLite consensus disorder prediction 171 199 - -
Trre11g02250 360 SMART HOX_1 196 258 IPR001356 GO:0003677
Trre11g02250 360 Coils Coil 47 67 - -
Trre11g02250 360 FunFam Homeobox-leucine zipper protein 18 181 259 - -
Trre11g02250 360 CDD homeodomain 198 255 IPR001356 GO:0003677
Trre11g02250 360 MobiDBLite consensus disorder prediction 38 73 - -
Trre11g02250 360 ProSitePatterns 'Homeobox' domain signature. 229 252 IPR017970 GO:0000981|GO:0006355
Trre11g02250 360 MobiDBLite consensus disorder prediction 328 360 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g02250 Trre-Chr11 26617272 26620049 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g02250 77 317 Homeobox Transcription Factor Family AT5G47370 55.510 2.27e-67 212
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Trre11g02250 HD-ZIP_N 9.8e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g02250 K09338 - gmx:100805312 427.557