Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g02236 ATGGAGCTTGATTTAAATGAGAAGCCTGTGGACCGAACTGAAGAGCAAATGAAACGGCTCGAGGCTATTTTAAAGGCAAAACAGACTCACAAGAAGCAAAAATGTTACACTCCAATTCAGATAACTAATTTTGCAGGAGAATTGTTAATAAAAACCGATAATGTTCAAGAAGATGAAAGCAAAGTGACCAAGAAAGAAGTTGAAGGAGGGACATCGGAATGCGAGAAAACACGTAAAAGGAAGGCTTCCTGTTTAGTTGCGAAGGCGTTGGGGATGGAAACATCCACAGATGGCGTTGCAGGCCGCACTAGAAACTTCTTTGACTGTAATATATGTTTGGATATGGCAATTGATGCTGTATTAACTTGCTGTGGTCACTTGTTTTGTTGGGAATGCTTCTATCAGTTACCATATGCTTATTCAAATGCCAAAGAGTGTCCTGTGTGTGCAGGAGAAGTTGTTGACGCCGATGTCATACCAGTATATGGCAATGGAAGGGTCGATGATAGTGGTCGGTTTGAATTGAAAGAATCTGGTTTAACAGTTCCTAGTCGGCCGTACGCACCTAGAGTTGAGAGTACTAGGCAGCGCCGCAGAAGACGAACCTCACAAATCATATGTAAATAA 627 0.4195 MELDLNEKPVDRTEEQMKRLEAILKAKQTHKKQKCYTPIQITNFAGELLIKTDNVQEDESKVTKKEVEGGTSECEKTRKRKASCLVAKALGMETSTDGVAGRTRNFFDCNICLDMAIDAVLTCCGHLFCWECFYQLPYAYSNAKECPVCAGEVVDADVIPVYGNGRVDDSGRFELKESGLTVPSRPYAPRVESTRQRRRRRTSQIICK 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g02236 208 MobiDBLite consensus disorder prediction 184 204 - -
Trre11g02236 208 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 66 201 IPR045103 GO:0005783|GO:0006511|GO:0061630
Trre11g02236 208 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 91 163 IPR013083 -
Trre11g02236 208 SMART ring_2 109 149 IPR001841 -
Trre11g02236 208 Pfam Zinc finger, C3HC4 type (RING finger) 108 153 - -
Trre11g02236 208 SUPERFAMILY RING/U-box 101 159 - -
Trre11g02236 208 ProSiteProfiles Zinc finger RING-type profile. 109 149 IPR001841 -
Trre11g02236 208 Coils Coil 10 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g02236 Trre-Chr11 26031670 26032296 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g02236 100 200 C3H Transcription Factor Family AT3G58030 52.941 4.31e-29 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g02236 - - cam:101495597 268.855