Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g02225 ATGGATTGCCGATATGAGACCGCAGAAACTCGAAGGAACAAGTGTGCAGCATGCTATAGGCAGTTCAACAAGGTGGAGCACCTAGTGGATCACATGAAGATCTCTTACCATTCTGTTCATGAACCAACTTGTGGTGTTTGCAGGAAACATTGCAGATCTTTTGAGTCTCTAAGGGAACATCTTATAGGTCCATTGCCAAAACAAGAATGCAGAGAAATCTTTGCCAACCGAGGGTGCAAGTTTTGCTTGAAAGTCCTTGATAGCCCTAACTCTCGAAGGATTCACCAACAAAAGTGCCAACACAATGGATTAAATGGAATATGTGGTCGCTTTTCAAACTTGGGAATTCGCGATAATTTGACAATTGGTGGTGGAAGAGGACCACAAGTAGTTGCACTAGCTTGTAAAATGGTAGGAGGAGGAAGTGATGGCTCATTGGATCTATGTGCAAGAGTTTGCTTAATAGATGAGAATGAGAACATTATCTTTCATTCTTATGTCACTCCACCAATTCCAGTCACAAATTACAGGTATGAGACAACAGGTATTAGACATGAATACTTAAGGGATGCAATGCCATTGAAAATAGTTCAAAGGAAGATTCAAGAGTTCCTTTGTAATGGAGAACCTATGTGGACAATTCGTTCAAGAGGAGGAAAAGCTAGGATTCTTGTGGGTCATGGTTTAGATCATGACCTTGCTTCTTTGCAAATTGAGTATCCAACACCAAAAATAAGGGACACTGCAAAATACCCTCCACTCATGAAAACAAGCAAGCTCAGCAATTCACTCAAATACTTAACACAAGCATATCTTGGATATGACATTCAAAATGGGATACAAGATCCTTATGATGATTGTGTTGCAGCAATGAGACTATACATGAGAATGAGGGCACAAATGCACAAAATAGAAGATTACCCTTTGGCATCTGATCCACAAAACAGAAATAATTTTGCTTCATGGAGGCCAAGTGAGCTTGAAAGAATGAGTCCTGAACAAATGCTAGATATCTCAAGATCTGATTACTACTGCTGGTGCATGGATCCATGA 1053 0.4017 MDCRYETAETRRNKCAACYRQFNKVEHLVDHMKISYHSVHEPTCGVCRKHCRSFESLREHLIGPLPKQECREIFANRGCKFCLKVLDSPNSRRIHQQKCQHNGLNGICGRFSNLGIRDNLTIGGGRGPQVVALACKMVGGGSDGSLDLCARVCLIDENENIIFHSYVTPPIPVTNYRYETTGIRHEYLRDAMPLKIVQRKIQEFLCNGEPMWTIRSRGGKARILVGHGLDHDLASLQIEYPTPKIRDTAKYPPLMKTSKLSNSLKYLTQAYLGYDIQNGIQDPYDDCVAAMRLYMRMRAQMHKIEDYPLASDPQNRNNFASWRPSELERMSPEQMLDISRSDYYCWCMDP 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g02225 350 FunFam RNA exonuclease 4 126 313 - -
Trre11g02225 350 CDD REX4_like 131 294 IPR037431 GO:0006364|GO:0008408
Trre11g02225 350 ProSitePatterns Zinc finger C2H2 type domain signature. 15 37 IPR013087 -
Trre11g02225 350 SMART exoiiiendus 129 303 IPR013520 -
Trre11g02225 350 Pfam Exonuclease 147 293 IPR013520 -
Trre11g02225 350 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 17 343 IPR047021 GO:0004527
Trre11g02225 350 SUPERFAMILY Ribonuclease H-like 143 300 IPR012337 -
Trre11g02225 350 Gene3D - 127 311 IPR036397 GO:0003676
Trre11g02225 350 ProSiteProfiles Zinc finger C2H2 type domain profile. 13 42 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g02225 Trre-Chr11 25877554 25880060 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g02225 6 349 C2H2 Transcription Factor Family AT3G27970 75.793 0.0 563
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g02225 - - gmx:100813973 640.958