Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g02219 ATGACGACGGCGATTACGGCGGCGGAACCCGACCTAAAAACATACTGGTGCCACGAATGCGACATGAGCGTCTCTCTAACTTCTTCATCAACTCCTTCACCTCTTCTCTGTCCTCATTGTCACACTCACTTCCTCGAACTCATGGATTCACCTTTCTCCCAAAACGACGCCGAATCAACTTCTTCCCTATTCGACGTCGTTTTCCAAGACGCACTTTTACTACTCACACCTCCTTCAACCAAACCACGCACTGAAATACTAATCCCTACAATAACCGTCACACAAACGCTTCTTACTCTTCTCGATCCAAACGGTGTCGTTTTATGTGCAGTTTGTAAAGAATCGATTTATGTTGATGAAGAAGCGAAACAACTTCCTTGTGATCATCTTTATCATTCTGATTGTATAACTCCGTGGCTTCTTCTTCAATCTTCTTGTCCTCTTTGTCGGTTCCGAATCTCGGAACAAGAAGAGGATGAGAATGATGATGAGGATGAAGATGATGATGATGTTGTTGTTGGTGGTGGTGCTGATGTGATGAGGCAGATGATAGTGAACTTAGTGGTGGTGGTGGTGGTGGTGGTGATGGAGAATCTTGATCCTGAAATTCTTTGCGGTATATAG 624 0.4439 MTTAITAAEPDLKTYWCHECDMSVSLTSSSTPSPLLCPHCHTHFLELMDSPFSQNDAESTSSLFDVVFQDALLLLTPPSTKPRTEILIPTITVTQTLLTLLDPNGVVLCAVCKESIYVDEEAKQLPCDHLYHSDCITPWLLLQSSCPLCRFRISEQEEDENDDEDEDDDDVVVGGGADVMRQMIVNLVVVVVVVVMENLDPEILCGI 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g02219 207 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 59 152 - -
Trre11g02219 207 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 103 168 IPR013083 -
Trre11g02219 207 Pfam zinc-ribbon 14 48 IPR039525 GO:0061630
Trre11g02219 207 ProSiteProfiles Zinc finger RING-type profile. 109 150 IPR001841 -
Trre11g02219 207 SMART ring_2 109 149 IPR001841 -
Trre11g02219 207 Pfam Ring finger domain 109 150 IPR001841 -
Trre11g02219 207 SUPERFAMILY RING/U-box 103 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g02219 Trre-Chr11 25814968 25817426 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g02219 8 70 C3H Transcription Factor Family AT3G60080 49.254 1.43e-09 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g02219 K11982 - gmx:100782164 200.29