Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Trre11g02219 | ATGACGACGGCGATTACGGCGGCGGAACCCGACCTAAAAACATACTGGTGCCACGAATGCGACATGAGCGTCTCTCTAACTTCTTCATCAACTCCTTCACCTCTTCTCTGTCCTCATTGTCACACTCACTTCCTCGAACTCATGGATTCACCTTTCTCCCAAAACGACGCCGAATCAACTTCTTCCCTATTCGACGTCGTTTTCCAAGACGCACTTTTACTACTCACACCTCCTTCAACCAAACCACGCACTGAAATACTAATCCCTACAATAACCGTCACACAAACGCTTCTTACTCTTCTCGATCCAAACGGTGTCGTTTTATGTGCAGTTTGTAAAGAATCGATTTATGTTGATGAAGAAGCGAAACAACTTCCTTGTGATCATCTTTATCATTCTGATTGTATAACTCCGTGGCTTCTTCTTCAATCTTCTTGTCCTCTTTGTCGGTTCCGAATCTCGGAACAAGAAGAGGATGAGAATGATGATGAGGATGAAGATGATGATGATGTTGTTGTTGGTGGTGGTGCTGATGTGATGAGGCAGATGATAGTGAACTTAGTGGTGGTGGTGGTGGTGGTGGTGATGGAGAATCTTGATCCTGAAATTCTTTGCGGTATATAG | 624 | 0.4439 | MTTAITAAEPDLKTYWCHECDMSVSLTSSSTPSPLLCPHCHTHFLELMDSPFSQNDAESTSSLFDVVFQDALLLLTPPSTKPRTEILIPTITVTQTLLTLLDPNGVVLCAVCKESIYVDEEAKQLPCDHLYHSDCITPWLLLQSSCPLCRFRISEQEEDENDDEDEDDDDVVVGGGADVMRQMIVNLVVVVVVVVMENLDPEILCGI | 207 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Trre11g02219 | 207 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE PRAJA | 59 | 152 | - | - | |
Trre11g02219 | 207 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 103 | 168 | IPR013083 | - | |
Trre11g02219 | 207 | Pfam | zinc-ribbon | 14 | 48 | IPR039525 | GO:0061630 | |
Trre11g02219 | 207 | ProSiteProfiles | Zinc finger RING-type profile. | 109 | 150 | IPR001841 | - | |
Trre11g02219 | 207 | SMART | ring_2 | 109 | 149 | IPR001841 | - | |
Trre11g02219 | 207 | Pfam | Ring finger domain | 109 | 150 | IPR001841 | - | |
Trre11g02219 | 207 | SUPERFAMILY | RING/U-box | 103 | 157 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Trre11g02219 | Trre-Chr11 | 25814968 | 25817426 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Trre11g02219 | 8 | 70 | C3H Transcription Factor Family | AT3G60080 | 49.254 | 1.43e-09 | 54.7 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Trre11g02219 | K11982 | - | gmx:100782164 | 200.29 |